Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

Subject, 624 a.a., Methyl-accepting chemotaxis protein PctA from Pseudomonas putida KT2440

 Score =  312 bits (800), Expect = 2e-89
 Identities = 197/628 (31%), Positives = 329/628 (52%), Gaps = 18/628 (2%)

Query: 3   SYSLKQKILISVVIALSLVISLLSWQSYSSQKSLLLQNSLEQVQRLGEQQAERIQEWLAG 62
           S     KIL++  + + L  SL +  +   Q++ + ++    +  +G   +  I+    G
Sbjct: 4   SLRFSHKILLAASLIVILAFSLFTLYNDYLQRNAIREDLENYLAEMGASTSTNIRNLFEG 63

Query: 63  RQDIVGALASKVEDNSLSA---LQQAQASGRFQLTYYGTETGQMLDSDPSIDRTGYDPRT 119
           R  +V  LA  +  +  +A   + Q      F   Y G   G       +    GYDPRT
Sbjct: 64  RIKLVENLAQNIAQDPANAETLMGQNALISSFLTVYLGKVDGGFSVRPDAKMPDGYDPRT 123

Query: 120 RPWYKQAMNERGLILTKPYVDVAYNVLVVTMAQ--ATSQGVVGGDLSIASLVESVNRMTL 177
           RPWYK  MN  G  LT+PY+D+  N +V+ +    ++S GVVGGDL++  LV+ +N +  
Sbjct: 124 RPWYKDGMNASGATLTEPYIDMTTNKMVIGILSKVSSSVGVVGGDLALDGLVQIINSLNF 183

Query: 178 PANGYAIMMHKDGTVIAYKDASKAMKPVGQIDNDLNHDLPQQS-RQAGTLLPMYFENEGR 236
              GYA +++  G ++ + D    MK +  +        PQ + +  G L  +  +++G+
Sbjct: 184 GGMGYAFLVNDQGKILVHPDKDLVMKSLSDL-------FPQHTPKLTGELTEV--QSDGQ 234

Query: 237 DKLVWGVDI---PNTDWELVIVLDKETLEAPLTDLLLTQFGLSAVVLLLSVLAISWLVNL 293
            +L+    I   P+ +W + + +DK+   + L+    +    + V +++ +  +  L+ +
Sbjct: 235 TRLLTFSPITGLPSANWYIGLSVDKDKAFSMLSTFRTSAVIATVVAVVIIIGLLGLLIRV 294

Query: 294 LLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFVGSQHQLISHIRQLAS 353
           L+ PL  +++A+  IA+G GDLT+R+ + + DE GVL ++FNRFV   H  I  +     
Sbjct: 295 LMQPLHTMTRAMEDIAEGEGDLTKRLHIHSHDEFGVLGNAFNRFVERIHSSIREVSSATE 354

Query: 354 ELDADAERSLKTNHIAVAELQRQQQEVAMVATAVTEMASATNEIAANAENTATAAQQSAA 413
           +++  A R +  ++ ++     Q      VA A+ E+ +A  EIA NA   +  A  +  
Sbjct: 355 QVNEVALRVISASNSSMTNSDEQSNRTNSVAAAINELGAAAQEIAGNAAQASQHASSARL 414

Query: 414 SSFQGKELVNKTRSSINSLADEVAQATDVIEDLSRHAQSISSILATIQGIAEQTNLLALN 473
            + +G+++V +  +++N L+D +  ++  IE L+    +I  IL  I  I++QTNLLALN
Sbjct: 415 LAEEGQQVVERNIAAMNRLSDLIVTSSAHIETLNSKTVNIGQILEVITSISQQTNLLALN 474

Query: 474 AAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTAKAVSLMESSQML 533
           AAIEAARAGE GRGFAVVADEVR L+ RTQ+S Q+V   IE LQ    ++V  ME SQ  
Sbjct: 475 AAIEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQTMIEELQVGARESVDTMEQSQRH 534

Query: 534 AGNSVEDANAAAKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQNTVAIKDVTDEI 593
           + +S++ AN A + L+ +T  +  I  M   +ATA EEQT V   I  +   I  +  E 
Sbjct: 535 SQDSMQIANQAGERLDSVTVRIGEIDGMNQSVATATEEQTAVVEAINMDINEINMLNQEG 594

Query: 594 TEAAKSDLTQAQALKARANDLNAQVATF 621
            E  ++ L     L+ +A  L   V +F
Sbjct: 595 VENLQATLRACSDLEQQAGRLKHLVGSF 622