Pairwise Alignments

Query, 527 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

Subject, 559 a.a., methyl-accepting chemotaxis protein from Pseudomonas fluorescens SBW25

 Score =  229 bits (585), Expect = 2e-64
 Identities = 164/559 (29%), Positives = 286/559 (51%), Gaps = 42/559 (7%)

Query: 5   AKTSTLTALPSVFASILLIIIGISSYRGFA--ELNNTSSRLVNNTKLAETFTNVREAFFE 62
           AK  +L  +P +  ++++ +  +   +G A  E+  T  RL+N+ K         +++ E
Sbjct: 7   AKVLSLAVVPVLLFAVVISLTTVWILQGQARNEVEETRQRLLNDAKAT------LQSYVE 60

Query: 63  LRLATLVHNSDAISLQQRNVRQLVEQL---AEFNTD--FMGQDARTIRTLLPQI------ 111
           + + T+    DA +      R  V +L     +  D  F G D+ TIR            
Sbjct: 61  VAMTTIKPLYDAAAPGDTAARTEVVKLLSNTRYGKDGYFFGYDSETIRLFKGNSPDGVGK 120

Query: 112 --------------EQYVRLYQQELAFAKQTGTEPELTSERGALG-----PKVSNEINQL 152
                            V++ +    + + + T+P  T     +G     PK    I   
Sbjct: 121 SFKDNRDPNGVYVNRDLVKVGKDGTHYLQYSSTQPGQTELVPKMGYTEYLPKWDMVIGTS 180

Query: 153 VKL--ITQRNHELGKQAEDKVNATEALLLGLILVAIVASLLSALFMSRRLVNIVHQIKRV 210
           V L  I  +   +  + E ++      +LG+ +V ++      + M+  ++  +H +K  
Sbjct: 181 VNLDGIEAQVAVVEAKVEKRMEGVLLSILGVAVVVLLVIAAVGMVMANTILRPLHLMKAN 240

Query: 211 VEHLA--DGDLTQKTQISGQNELCALGADLDRVIDHLRHMISDIAQASEHMSDQIGQLNV 268
           ++ +A  +GDLT++  I+ Q+EL  L    +R +D +  ++  I + +  ++  + Q++ 
Sbjct: 241 LDDIAAGEGDLTRRLAITSQDELGDLAGAFNRFVDKIHGLVRQITEMTTQLTGLVSQVSD 300

Query: 269 QSNANTHALQTHAVETDQVVTAMTEMSATAHNVAGDAASAARFTQQANEQADKSKKAVEQ 328
           Q+  +  A++    ETDQV TA+ +MS+ A  VA  A  A+   QQ + +   +K+ V+ 
Sbjct: 301 QAQRSEQAMERQRHETDQVATAINQMSSAAQEVARSAQGASVAAQQTDAEGQAAKRVVDG 360

Query: 329 AANTVVALVGKVDTAAHTIAEMNENTRHIATILDVIGDIADQTNLLALNAAIEAARAGEQ 388
           +   + ALV  + ++  ++  + ++   I ++L VI  IA+QTNLLALNAAIEAARAGE 
Sbjct: 361 SIAQIHALVNDIRSSGVSLDSLQQDVSSIVSVLSVIRSIAEQTNLLALNAAIEAARAGEA 420

Query: 389 GRGFAVVADEVRALAARTQASTAEINQMLERLRTGANSAVNAMDETKQSCQDAADTTTLV 448
           GRGFAVVADEVRALA+RTQ ST EI  M++RL+ G  +AV+AM  +  +    +      
Sbjct: 421 GRGFAVVADEVRALASRTQTSTQEIQGMIDRLQKGTEAAVDAMRRSSDAGDGTSAKANEA 480

Query: 449 TESLETLTTYVFDINGLSNQIATAAEEQSAVSEEINRNLNTIREMVEELNQSGKATLNSA 508
             SL+T+   +  IN ++ QIA+AAEEQ+AV+EEINR+++ I   V+ +    +    ++
Sbjct: 481 GASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQTS 540

Query: 509 TSLAATKEQLTGVVSHFRL 527
            SLA   ++L  +V  FR+
Sbjct: 541 RSLADLGQRLGQLVGQFRI 559