Pairwise Alignments

Query, 554 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella sp. ANA-3

Subject, 618 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

 Score =  259 bits (662), Expect = 2e-73
 Identities = 167/584 (28%), Positives = 282/584 (48%), Gaps = 63/584 (10%)

Query: 19  RGDEIYLRQPIKGQYLDFTWNEVQEKVQQLAGALRHLGLEPGDKIAVLSKNCAEWFITDL 78
           RGD I++RQ   G +  ++W++  + V+++A  L+ +G  PG+  ++LS    EW + DL
Sbjct: 34  RGDSIWMRQKELGIWRSWSWHQTADAVREIAAGLQSIGFAPGECASILSNTVIEWVLADL 93

Query: 79  ALMHGGYISVPIYPTANTDTIRYVLQHSGAKAIFLG---KLDHWADQEAGVGGELLRLAM 135
           A++  G +S  IYPT     + Y+ + S    +F+    +LD   +  AG+ G    +  
Sbjct: 94  AVLSCGGVSNGIYPTDAASQVHYLCEDSRTTVLFVEDDEQLDKALEVRAGLPGLRCIVVF 153

Query: 136 PYETM-----PAQYQWEQLLKMGNPLIEAPLPELDQTMT---------LIYTSGSTGQPK 181
             E +     P     + L ++G   +      +++T+          L+YTSG+TG+PK
Sbjct: 154 DMEGLRDLEDPGVMSLDALRELGRARLSTDPQAVERTVAACRPEDLAILVYTSGTTGKPK 213

Query: 182 GAIQTFASYGWTCQAVVRDLRTNGNDRLLSYLPLAHITERVAIEGSSFYSGSTVAFVESL 241
           GA+ + A   +T +     +  +  D  + +LPL HI ER+  E  + Y+GS + FVE+ 
Sbjct: 214 GAMHSHAGLVYTARGYNTLIAQDEKDERMCFLPLCHIAERMGGEYFAMYTGSILNFVENP 273

Query: 242 DSFVADVQRAKPTVFFSVPRLWSLFQKNIID---------------KIGVGK-------- 278
           ++   +V+   PTVF +VPR+W  F   ++                 IGVG+        
Sbjct: 274 ETVPENVREIAPTVFTAVPRVWEKFYSGVMIALKEAGPLQQAAYKWSIGVGEAIAAKVLA 333

Query: 279 -----LNLLLKIPLISSLVKHKIHKGLGLNHCRLLGSGSAPIPPSLIHWYHSIGLDICEA 333
                  L  K  L   L      K +G++  R L +G+API P L+ WY ++G+ + E 
Sbjct: 334 GEPVGAGLKFKFRLARLLALDNARKLIGIHRSRFLVTGAAPISPELVKWYLALGVPMLEV 393

Query: 334 WGMTENCAYSIINYPFDVRKIGTVGKPVQDCQIR-QGEDGELLLKSPGLMTAYYLQPEAT 392
           WGMTE+C  S    P    K G++G      ++R     GE+L++ P +   Y   PE T
Sbjct: 394 WGMTESCGASTA-VPATRIKPGSIGPATGYNEVRIDPATGEILVRGPNVFMGYLNLPEKT 452

Query: 393 AAAFDPDGFFHTGDLCAIDADGCVTITGRVKDNFKTAKGKYVAPVPIERKLAQDPHVELI 452
           A   DP+G+ HTGD+  +D DG   IT R+KD   TA GK V P  +E +L    ++   
Sbjct: 453 AETIDPEGWLHTGDVGVMDEDGYFRITDRMKDIIITAGGKNVTPSELENELKFSLYITDA 512

Query: 453 CVIGSGLPHPVALVQL----------------SEGATLQAREEVRTSLKATLDSVNPHLE 496
            VIG   P+   +V +                S   +L   +EV   ++  +D VN    
Sbjct: 513 VVIGDKKPYLTVIVMIDQENVEKFAQDHDVPFSNYESLTRTKEVLDLIQGEIDRVNAKFA 572

Query: 497 SHEHVDAIVVVNEPWTIENDVLTPTLKIKRHVLEKAFSERVDGI 540
             E +    ++    + E++ LTPT+K+KR +++  ++ER++ +
Sbjct: 573 RVEQIKKFFLLETQLSAEDEELTPTMKLKRKLVQTKYAERIEAM 616