Pairwise Alignments

Query, 554 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella sp. ANA-3

Subject, 549 a.a., AMP-binding protein from Pseudomonas fluorescens SBW25

 Score =  418 bits (1075), Expect = e-121
 Identities = 221/553 (39%), Positives = 322/553 (58%), Gaps = 8/553 (1%)

Query: 1   MDNAIKTPVEMLAHWANTRGDEIYLRQPIKG-QYLDFTWNEVQEKVQQLAGALRHLGLEP 59
           M  A + P+++          + +L QP  G +    TW +V  + +  A  LR   L  
Sbjct: 1   MPVAFRLPLQVFFEREARHPRQTFLVQPSGGGEVQPLTWGDVGHQARCAAHWLRARALPQ 60

Query: 60  GDKIAVLSKNCAEWFITDLALMHGGYISVPIYPTANTDTIRYVLQHSGAKAIFLGKLDHW 119
           G  IA++SKNCA W I DLA+   G++SVP+YP    D++ +VL HS A  +F+GKLD W
Sbjct: 61  GSHIALISKNCAHWIIADLAIWMAGHVSVPLYPNLTADSVAHVLTHSEAALVFIGKLDDW 120

Query: 120 ADQEAGVGGELLRLAMPY-ETMPAQYQWEQLLKMGNPLIEAPLPELDQTMTLIYTSGSTG 178
                GV   +  +++P   T    + W  L +  +P+ + PL       T+IYTSG+TG
Sbjct: 121 PAMAPGVPSNVPTISLPLCPTGTFDFSWADL-QACSPIQDEPLLAATDLATIIYTSGTTG 179

Query: 179 QPKGAIQTFASYGWTCQAVVRDLRTNGNDRLLSYLPLAHITERVAIEGSSFYSGSTVAFV 238
            PKG + +F + G+              DRLLSYLPL H+ ER+ +E ++ Y+G TV F 
Sbjct: 180 LPKGVMHSFGALGFAATRGTELFGLGEGDRLLSYLPLCHVAERMFVEMAAIYTGQTVFFA 239

Query: 239 ESLDSFVADVQRAKPTVFFSVPRLWSLFQKNIIDKIGVGKLNLLLKIPLISSLVKHKIHK 298
           ESLD+F+ D++RA+PT  F VPR+W+ FQ  +  KI   +L+ LL++P I   V HK+  
Sbjct: 240 ESLDTFLTDLRRARPTALFGVPRIWTKFQMGVYAKIPEKRLDTLLRLPFIGKRVGHKVLA 299

Query: 299 GLGLNHCRLLGSGSAPIPPSLIHWYHSIGLDICEAWGMTENCAYSIINYPFDVRKIGTVG 358
           GLGL+  R+  SG+AP+P +L+ WY  +GLD+ E +GMTE+C YS +  P   + +G +G
Sbjct: 300 GLGLDALRIALSGAAPVPEALLRWYQRLGLDVLEVYGMTESCGYSHVCRP-GQQTLGWIG 358

Query: 359 KPVQDCQIRQGEDGELLLKSPGLMTAYYLQPEATAAAFDPDGFFHTGDLCAIDADGCVTI 418
            P    ++R   +GE+ ++S   M  YY  P+ TA     DGF  TGD    DADG + +
Sbjct: 359 LPCPGVEVRIDPEGEVQVRSGATMLGYYKDPQKTAETITADGFLRTGDKGEQDADGRLRL 418

Query: 419 TGRVKDNFKTAKGKYVAPVPIERKLAQDPHVELICVIGSGLPHPVALVQLSEGATLQARE 478
           TGR+K+ FKT+KGKYVAP PIE +LA+   +E +CV+G GLP P+ L  LS  A  +   
Sbjct: 419 TGRLKEIFKTSKGKYVAPAPIENRLAEHARIEQVCVVGDGLPAPIGLCVLS--AVSEDPH 476

Query: 479 EVRTSLKATLDSVNPHLESHEHVDAIVVVNEPWTIENDVLTPTLKIKRHVLEKAFSERVD 538
            +R+SL+  L  VN  L+ HE +  +VVV + W +EN  LTPTLKIKR+V+E  +  +  
Sbjct: 477 ALRSSLERWLAQVNQALDKHERLRQLVVVKDNWAVENGFLTPTLKIKRNVIESTYGAQFQ 536

Query: 539 --GIRGAQVRWED 549
               R   V W+D
Sbjct: 537 AWSERSETVLWQD 549