Pairwise Alignments

Query, 493 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq) from Shewanella sp. ANA-3

Subject, 494 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Dickeya dadantii 3937

 Score =  420 bits (1080), Expect = e-122
 Identities = 231/487 (47%), Positives = 295/487 (60%), Gaps = 5/487 (1%)

Query: 4   LRDLLAPWFPYAGEQTFLELTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLV 63
           LRD+LAPW   A E+   E+TLDSR    GD+F+A+ GHK DGR +I +A+AQG  AV+ 
Sbjct: 6   LRDVLAPWVTDAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVA 65

Query: 64  HTDKIDEQGKVIATEQGVQIYFYQLARQVSAVAAVRYPVVQGQSMGIVGITGTNGKTSTS 123
             D+    G +        IY   L +++SA+A  R+      S+ ++G+TGTNGKT+T+
Sbjct: 66  QADEATPDGTLTEMHGVPVIYLENLNQRLSALAG-RFYRQPSASLQLIGVTGTNGKTTTT 124

Query: 124 QLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFADKGVNTCAMEV 183
           QL AQ    L   +AVMGT+GNGL G +  S NTT  A+ + + L +  ++G +  AMEV
Sbjct: 125 QLLAQWSQALGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAMEV 184

Query: 184 SSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAEAKQMLFRFDSLLHGLVNLDDP 243
           SSHGLVQ RV+A+ F  AVFTNL+RDHLDYHGDM NY  AK  LF    +   ++N DD 
Sbjct: 185 SSHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMTNYEAAKWRLFAEHQVGQKIINADDE 244

Query: 244 VGAAWLSELANVPAKMWGFSIEAHTEVAFYTKNAQFNDQG--VQATLVWPEGEVDIRSPL 301
           VG  WL  L +  A      I+A         +  ++D G  VQ    W  GE++ R  L
Sbjct: 245 VGRRWLQRLPDAVAVSVAGEIDAGRAHWLKATHIDYHDSGFTVQFDSSWGAGEINSR--L 302

Query: 302 LGAFNLSNLLAALSALYLQGMDMRALASKVPYLVPVAGRMERFTTADNITLVVDYAHTPD 361
           +GAFN+SNLL AL+ L   G  +  L      L PV GRME F  +   T+VVDYAHTPD
Sbjct: 303 MGAFNVSNLLLALATLLSLGYSLEQLVKTGSALQPVCGRMEVFLASGRPTVVVDYAHTPD 362

Query: 362 AIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQAAEQCADRIMVTSDNARSEDPNQ 421
           A+E+AL A R HC G LWCVFGCGGDRD+GKRPLMG  AEQ ADR++VT DN RSEDP  
Sbjct: 363 ALEKALAAARLHCRGVLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSEDPQA 422

Query: 422 IITDIIQGLTHPERALTEVDRVAAIKHVVAQAKPGDVILLAGKGHETYQEAAGVRHDYDE 481
           I+ DI+ GL    R      R  A+   V QA   DV+L+AGKGHE YQ     R DY +
Sbjct: 423 IVADILSGLLDAGRVQAIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGNERLDYSD 482

Query: 482 RALARQL 488
           R    +L
Sbjct: 483 RITVARL 489