Pairwise Alignments

Query, 493 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq) from Shewanella sp. ANA-3

Subject, 495 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase from Escherichia coli BL21

 Score =  419 bits (1077), Expect = e-121
 Identities = 228/488 (46%), Positives = 302/488 (61%), Gaps = 6/488 (1%)

Query: 4   LRDLLAPWFPYAGEQTFLELTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLV 63
           LRDLLAPW P A  +   E+TLDSR    GD+F+A+ GH+ DGR++I +A+AQG  A++ 
Sbjct: 6   LRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIA 65

Query: 64  HTDKIDEQGKVIATEQGVQIYFYQLARQVSAVAAVRYPVVQGQSMGIVGITGTNGKTSTS 123
                   G++        IY  QL  ++SA+A  R+      ++ +VG+TGTNGKT+T+
Sbjct: 66  EAKDEATDGEIREMHGVPVIYLSQLNERLSALAG-RFYHEPSDNLRLVGVTGTNGKTTTT 124

Query: 124 QLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFADKGVNTCAMEV 183
           QL AQ   LL   +AVMGT+GNGL G+++ + NTT  A+ +  +L    D+G   CAMEV
Sbjct: 125 QLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEV 184

Query: 184 SSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAEAKQMLFRFDSLLHGLVNLDDP 243
           SSHGLVQ RV A+ F  +VFTNL+RDHLDYHGDME+Y  AK +L+        ++N DD 
Sbjct: 185 SSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDE 244

Query: 244 VGAAWLSELANVPAKMWGFSIEAHTEVAFYTKN-AQFNDQG--VQATLVWPEGEVDIRSP 300
           VG  WL++L +  A      I  +    +   N   ++D G  ++ +  W +GE++  S 
Sbjct: 245 VGRRWLAKLPDAVAVSMEDHINPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIE--SH 302

Query: 301 LLGAFNLSNLLAALSALYLQGMDMRALASKVPYLVPVAGRMERFTTADNITLVVDYAHTP 360
           L+GAFN+SNLL AL+ L   G  +  L      L PV GRME FT     T+VVDYAHTP
Sbjct: 303 LMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTP 362

Query: 361 DAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQAAEQCADRIMVTSDNARSEDPN 420
           DA+E+AL A R HCAG+LWCVFGCGGDRDKGKRPLMG  AE+ AD  +VT DN R+E+P 
Sbjct: 363 DALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPR 422

Query: 421 QIITDIIQGLTHPERALTEVDRVAAIKHVVAQAKPGDVILLAGKGHETYQEAAGVRHDYD 480
            II DI+ G+     A     R  A+   V QAK  DV+L+AGKGHE YQ     R DY 
Sbjct: 423 AIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS 482

Query: 481 ERALARQL 488
           +R    +L
Sbjct: 483 DRVTVARL 490