Pairwise Alignments

Query, 493 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq) from Shewanella sp. ANA-3

Subject, 489 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase from Agrobacterium fabrum C58

 Score =  239 bits (611), Expect = 1e-67
 Identities = 183/508 (36%), Positives = 245/508 (48%), Gaps = 53/508 (10%)

Query: 2   MLLRDLLAPWFPYAGEQTFLEL--------TLDSRAIRRGDVFLALPGHKVDGRQFIDKA 53
           M LRD+    FP   E    E+        T DSR    G +F+A+ G K DG  ++  A
Sbjct: 1   MNLRDISGNAFPELKELLLSEIGAIEIGGITADSRKAAPGSLFVAVAGTKADGAAYVKDA 60

Query: 54  LAQGATAVLVHTDKIDEQGKVIATEQGVQIYFYQLARQVSAVAAVRYPVVQGQSMGIVGI 113
           +A+GA AV+             A E  V +      R   ++AA R+   Q  +M  V +
Sbjct: 61  VAKGAVAVVSGH----------AVEADVPVLVVTDPRLYLSLAASRFYGKQPDTM--VAV 108

Query: 114 TGTNGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFAD 173
           TGT GKTS +    Q+       AA +GT G    G       TT D +TL   L E A 
Sbjct: 109 TGTAGKTSVASFVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAS 168

Query: 174 KGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAEAKQMLFRFDSL 233
           +GV   AME SSHGL Q R+D V    A FTNL RDH+DYH  +E+Y  AK  LF  D+L
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVHLSAAGFTNLGRDHMDYHPTIEDYMAAKMRLF--DTL 226

Query: 234 LH----GLVNLDDPVGAAWLSELANVPAKMWGFSIEAHTEVAFYTKNAQF-------NDQ 282
           +      ++  DDP    W         K  G + EA  EV    +N Q+       + +
Sbjct: 227 MEKGAPAVIFADDP----WSD-------KAIGAAREAGLEVRTVGRNGQYLTLKRVEHFR 275

Query: 283 GVQATLVWPEG---EVDIRSPLLGAFNLSNLLAALSALYLQGMDMRALASKVPYLVPVAG 339
             Q   V  +G   EVDI  PL G F ++N L A       G+        +  LV  AG
Sbjct: 276 HKQMIEVHHDGVIFEVDI--PLAGDFQVANALVAAGLAMSTGVPAATALKALEKLVGAAG 333

Query: 340 RMERFTTADNITLV-VDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQ 398
           R+E      N  L  VDYAH PDA+E  L ++R   +G +  VFGCGGDRDKGKRP+MG+
Sbjct: 334 RLELVGQTKNGALAYVDYAHKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMGE 393

Query: 399 AAEQCADRIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKHVVAQAKPGDV 458
            A + +D ++VT DN RSED   I ++++        AL   DR  AI+H V+    GD 
Sbjct: 394 VATRLSDIVIVTDDNPRSEDAATIRSEVMAAAA---GALEIGDRAEAIRHAVSMLSHGDT 450

Query: 459 ILLAGKGHETYQEAAGVRHDYDERALAR 486
           +++AGKGHE  Q    V   + +    R
Sbjct: 451 LIVAGKGHEEGQIVGSVTLPFSDHEQVR 478