Pairwise Alignments

Query, 1767 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella sp. ANA-3

Subject, 1117 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  401 bits (1030), Expect = e-115
 Identities = 308/969 (31%), Positives = 471/969 (48%), Gaps = 65/969 (6%)

Query: 727  RDGSIRWVHEKGKASYTEEGFPLWFDGSIDDITESKLAMVELEASRLQLTNITESIPCTV 786
            R G   +  E      T  G P  F   + DI+E K    E+  S  +  +  +S     
Sbjct: 167  RRGGASFPIELAAGDLTPTGSPQ-FVVIMRDISERKRIEREMAESEERFRDFAQSTS--- 222

Query: 787  YQLRWVSPADHTFTFLSGAAF--------HMLGLHREDLLKDFNIIAERIFDEERPEVVR 838
                W    D  FT  SG           H +G  R++++ D           + P  VR
Sbjct: 223  -DWFWEMGPDLRFTGFSGQFTEHTRTLPDHYVGRTRDEMISD-----------DTPAEVR 270

Query: 839  ALAGKSEDKLQWVREFRY--RHPNGSIRWMEAGASGHYNDDGAII-WNGYVMDITERKAI 895
                      +  R+F Y  R  +G  R++       ++  G    + G   DITE    
Sbjct: 271  RQNLADMAARRPFRDFVYHTREMDGPGRFLRVNGKPVFDASGEFTGYRGTASDITEEIEA 330

Query: 896  EEELAVSEAHFKALFDGSTI-------GIVNVDAKGVILDCNDQYCEDMGQTRESLCGVP 948
            EE L  S+A  + L + +         GIV +D  G     N    + +      L G  
Sbjct: 331  EERLKASQAEIERLAERNNSILESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVGSD 390

Query: 949  IFDVLSLQDKETAKAQFRELAEGKVDHYRGERSFIRPNGEPLWMTVNVSALFDSQKQFES 1008
            I  +++L D  TA+  ++ L            SF R +G PL +    S + D   Q   
Sbjct: 391  ILPLMAL-DLHTAEKLYQILLRLTESIRDDTASFKRRDGSPLPVEYIASPVMDRGNQV-G 448

Query: 1009 AVVSMVDMTELKLLSDELLVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1068
             V+   D+T+ +L+  +L  AKE A+A ++ K +FLA MSHEIRTPMN +IGM+ L L T
Sbjct: 449  VVLGFRDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDT 508

Query: 1069 ALDKKQKNYVEKIERASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSE 1128
             L ++Q+++ E I  + +SLL++INDILDFSK+EAGKLD++   F+L  ++E + D+ + 
Sbjct: 509  RLSEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAP 568

Query: 1129 KAAHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQND 1188
            +A  K +E+   + P +   +  D  RL QVL+NL  NA+KFTE+G V + ++L++  + 
Sbjct: 569  RAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGPDA 628

Query: 1189 DVVLRFSVRDSGIGLTADQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIG 1248
              + RF VRD+GIG+  + Q +LF  FSQ D ST R+YGGTGLGLAI ++L ELMGG +G
Sbjct: 629  PAMARFDVRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGEVG 688

Query: 1249 VESQFGHGSTFYFTVKLQISSGQKLTVAQELEGMPILVADDNATARDIMRTTLESMGFRV 1308
            VES  G GS F+ T+ L++ + Q      +L G  +LV DDN    D++   L + G  V
Sbjct: 689  VESAVGRGSRFWITLPLELLAPQS-AAPPDLSGHRVLVVDDNPVNCDVIERQLRAFGVEV 747

Query: 1309 DT---VRSGEEAVTR--CIQQEYAVALIDWKMPNLDGIETAKQIKQQAKKAPRILMVSAH 1363
                   SG   +TR   +   + VA++D +MP + G E  + I      A   ++V++ 
Sbjct: 748  HACLDAGSGMGELTRAAAMGTPWEVAVVDSQMPVVTGSEMVRMIHAIPMLAGTRIVVTSS 807

Query: 1364 ANQDFLSQIEELGLAGYISKPISASRLLDGIINSLGRAGVLPVRRQSESIDP-KLLLP-L 1421
                      +  +  ++ KP+  S LLD I   LG  G  P  R ++  +  K   P  
Sbjct: 808  QGMPADQNDGQPAIDAFLHKPLRQSTLLDTIGRVLGLTG--PAERPADHAEEYKASEPAA 865

Query: 1422 KGKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLEQQSFDLVLMDCQMPVMD 1481
            K  RIL+ EDN +N +VA   L ++G  + +  +G  AL+ +    +D+VLMD QMP MD
Sbjct: 866  KRLRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLPYDVVLMDVQMPEMD 925

Query: 1482 GYQATQALRKRP-ELTELPVVAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKY 1540
            G +AT+A+R  P    ++P+VAMTANAM GD +MC  AGM+ +I+KPI+ + L + L KY
Sbjct: 926  GLEATRAIRALPLAAAQVPIVAMTANAMRGDDQMCFDAGMDGYISKPIDRHKLAEALAKY 985

Query: 1541 LGGSASLVDNTEPSQLVDIPVKPINLDSESVVKWPEHPELDIDRGLQLVQNSTRLYQRSF 1600
             G        T+P++    P     +D + +       E D             +  +  
Sbjct: 986  SG-----APETKPAEPPAAPQNSKAVDRDVLDALAADIEAD---------TVVEILVKFM 1031

Query: 1601 DRFVTSQRNVVDLINKALANDKRDDAVRMAHTLKGLAGNLSSSKLVELARQLELHLSEKS 1660
            +   T Q N   L         R    R AHT+KG A +L    + +    LE       
Sbjct: 1032 EDARTRQNNAAALAPTGDLEKVR----REAHTIKGAAASLGLLAVRDACLALEQAARAGG 1087

Query: 1661 EYQTELDQI 1669
            E   ++D++
Sbjct: 1088 EVAPQIDRL 1096



 Score = 51.6 bits (122), Expect = 5e-10
 Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 24/210 (11%)

Query: 580 GRDRPMANARHVRALKADGGEFVAEIALSILPADHEGRRQVAASIRDMTQKLAVEQKIRD 639
           G +R  A  R   A +  G  F  E+A   L     G  Q    +RD++++  +E+++ +
Sbjct: 152 GMNRIFALGRESMARRRGGASFPIELAAGDLTPT--GSPQFVVIMRDISERKRIEREMAE 209

Query: 640 SELRFRGLVTNIPGAVYRTRIGDVWVMEYVSDNIADITGFAASQFIENRQ--------RT 691
           SE RFR    +             W  E   D     TGF+  QF E+ +        RT
Sbjct: 210 SEERFRDFAQSTSD----------WFWEMGPD--LRFTGFSG-QFTEHTRTLPDHYVGRT 256

Query: 692 FASLILEED-RELCHQHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEEGFPLW 750
              +I ++   E+  Q++    A++   +  Y  R  DG  R++   GK  +   G    
Sbjct: 257 RDEMISDDTPAEVRRQNLADMAARRPFRDFVYHTREMDGPGRFLRVNGKPVFDASGEFTG 316

Query: 751 FDGSIDDITESKLAMVELEASRLQLTNITE 780
           + G+  DITE   A   L+AS+ ++  + E
Sbjct: 317 YRGTASDITEEIEAEERLKASQAEIERLAE 346



 Score = 36.6 bits (83), Expect = 2e-05
 Identities = 50/251 (19%), Positives = 95/251 (37%), Gaps = 33/251 (13%)

Query: 472 DASGHPRMLDLFMLPLVSDTGELMSVEMLFTDVTEQFSA--------------ATWSNAV 517
           +  G  R L +   P+   +GE        +D+TE+  A              A  +N++
Sbjct: 292 EMDGPGRFLRVNGKPVFDASGEFTGYRGTASDITEEIEAEERLKASQAEIERLAERNNSI 351

Query: 518 LEAAPEAMLIVEQMGSIVFTNTRCQILFGYDANSMLGLQVESLLPEAMRSNHARDRL-QF 576
           LE+  + ++ ++  G   F N     L  ++   ++G     +LP      H  ++L Q 
Sbjct: 352 LESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVG---SDILPLMALDLHTAEKLYQI 408

Query: 577 LREGRDRPMANARHVRALKADGGEFVAEIALSILPADHEGRRQVAASIRDMTQKLAVEQK 636
           L    +    +    +  + DG     E   S +  D   +  V    RD+TQ+  VE++
Sbjct: 409 LLRLTESIRDDTASFK--RRDGSPLPVEYIASPV-MDRGNQVGVVLGFRDITQRRLVERQ 465

Query: 637 IRDSELRFRGLVTNIPGAVYRTRIGDVWVMEY----VSDNIADITGFAASQFIENRQRTF 692
           +R+++            A  RT+   +  M +      + +  +TG      +   QR F
Sbjct: 466 LREAK--------EAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHF 517

Query: 693 ASLILEEDREL 703
           A  I +    L
Sbjct: 518 AETIRDSGESL 528