Pairwise Alignments

Query, 206 a.a., Na(+)-translocating NADH-quinone reductase subunit D (RefSeq) from Shewanella sp. ANA-3

Subject, 231 a.a., SoxR iron-sulfur cluster reduction factor component; electron transport inner membrane NADH-quinone reductase from Escherichia coli BL21

 Score =  120 bits (301), Expect = 2e-32
 Identities = 72/201 (35%), Positives = 114/201 (56%), Gaps = 16/201 (7%)

Query: 7   MRDMLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIISAIRNFI 66
           ++D++   ++ NN   +Q+LG+C  LAV+++   A+ + LA T VL  +NL IS +R++ 
Sbjct: 4   IKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTISTLRHWT 63

Query: 67  PNSVRIIAQMTVIASLVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRAEAFAMKYP 126
           P  +RI   + +IAS+V  V M++   A+ L + L +F+ LI+TNCI++GRAEAFA K  
Sbjct: 64  PAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKG 123

Query: 127 PHLAVVDAVGNAAGYGLVLISVAFVRELLGTGNLF-GHSVLTTVENGGW--YLPNEMF-- 181
           P L+ +D      G    +  +  +RE++G G LF G   L     G W   L  E+F  
Sbjct: 124 PALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDGADALL----GSWAKVLRVEIFHT 179

Query: 182 -------KLPPSAFFLIGLLI 195
                   LPP AF  +GL++
Sbjct: 180 DSPFLLAMLPPGAFIGLGLML 200