Pairwise Alignments

Query, 530 a.a., N-6 DNA methylase (RefSeq) from Shewanella sp. ANA-3

Subject, 489 a.a., Type I restriction enzyme EcoEI M protein from Pseudomonas putida KT2440

 Score =  164 bits (415), Expect = 7e-45
 Identities = 153/501 (30%), Positives = 237/501 (47%), Gaps = 61/501 (12%)

Query: 15  DILRDD-GINY-SDYVTELVLLLFIKMVHENT-EAELLD---KHTLPEGYRW----TDLH 64
           DI+R D G++  +  + +LV LLF+K+  +   E EL+D   K  +P+  RW     D  
Sbjct: 12  DIMRKDVGVDGDAQRIGQLVWLLFLKIFDDRELEWELMDDNYKSPIPDSCRWRTWAADPE 71

Query: 65  TKSGINLLNDYKALLLALSTGKRVMLDPN-DPEKTIEVQVHNDP---LISAIYADAQTRL 120
             +G + L D+              +D N  P+     +  N P   ++ +++ DA   +
Sbjct: 72  GMTG-DALKDF--------------IDNNLFPQLQNLHEYSNTPSAFVVRSVFEDAYNYM 116

Query: 121 REPRHLEQ-ITKTLDQIDWFSAK-RDGLGDLYEGLLEKNASETKSGAGQYFTPRVLINSM 178
           +  + L Q I K  + +D+  A+ R   G+LYE LL     +    AG+++TPR +   M
Sbjct: 117 KSGQLLRQVINKIQEGVDFNRAQERHEFGNLYEQLLRD--LQNAGNAGEFYTPRPVTEFM 174

Query: 179 VRCIKPQAGEYIQDPAAGTAGFLIAAHEYIK---AQPEYDDLSLKQIDFQRYHAYVGVEL 235
           VR + P+  E + DPA GT GFL  A E+ +    +   D+ +L+   F       GVE 
Sbjct: 175 VRMVDPKLAEKVMDPACGTGGFLTCAIEHKRRRYVKTAEDERTLQASIF-------GVEK 227

Query: 236 VPNTRRLALMNCLLHGMEGDDDGVVHLGNALGNVGQSLKPAD---VILANPPFGTSKGGE 292
            P    LA  N +LHG+E      +   N L     S  P++    I+ANPPFG  +  +
Sbjct: 228 KPLPHLLATTNMILHGIEVPSQ--IRHDNTLSKPLISWGPSERVHCIVANPPFGGMEE-D 284

Query: 293 ASITRDDLTFDTSNKQLAFLQHIYRNLKPGGRAAVVLPDNVLFEAGKGTDIRRDLMDKCN 352
              T     F T      FL  I + LK GGRAAVVLPD  LF  G  + I+  L+ +CN
Sbjct: 285 GIETNFPAAFRTRETADLFLVLIMQLLKDGGRAAVVLPDGFLFGEGIKSRIKEKLLTECN 344

Query: 353 LHTILRLPTGIFYA-QGVKTNVLFFTKGSAKDKHQQEQCTENVWVYDLR--TNMPSFGKR 409
           LHTI+RLP G+F    G+KTN+LFFTKG+          T+ VW Y+ +    + ++ K 
Sbjct: 345 LHTIVRLPNGVFNPYTGIKTNLLFFTKGTP---------TKQVWFYEHQYPAGVKNYSKT 395

Query: 410 TPFSDNHLAPFEQVYGEHAGGLSPRTEGEYSFGAEQVEIADTDENQGVDNRLVHSRWRCF 469
            P      A  E  +G  A G + R E  +++     E+   + N    N     +    
Sbjct: 396 RPMRIEEFAVEEAWWGSEADGFAARAENAFAWQVSVEELQARNWNLDCKNPHTGEQVSHD 455

Query: 470 SRDWIRDHKGDSLDISWLKDK 490
             + +R++     +IS L+D+
Sbjct: 456 PDELLRNYASVQDEISDLRDQ 476