Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 309 a.a., Inositol transport system sugar-binding protein (from data) from Pseudomonas simiae WCS417

 Score =  126 bits (316), Expect = 8e-34
 Identities = 78/226 (34%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 37  RTSFSEAVKAEAKQRGIDLKFADAQQKQENQIKAVRSFIAQGVDAIIIAPVVETGWKPVL 96
           R    +  K+  K  G+ L+F DA+     Q+  V +FI+Q VDAII+ PV       ++
Sbjct: 44  REDMDKQAKSYPKGDGVQLQFEDARADVVKQLSQVENFISQKVDAIIVNPVDTASTANII 103

Query: 97  KEAKRAKIPVVIVDRNIKVDDDSLFLTRIASDFSEEGRKIGQWLMDKTQGNCDIAELQGT 156
           K A  AKIP+V V+R       +  +  + SD  E G+   Q++ +K  G  +I  L G 
Sbjct: 104 KAATAAKIPLVFVNRRPDSQTLAPGVAAVTSDDVEAGKLQMQYIAEKLGGKGNIVILLGD 163

Query: 157 VGATAAIDRAAGFNQVIANYPNAKIVRSQTGEFTRAKGKEVMEGFLKAQNGQPLCAVWSH 216
           +   +  +R  G  +V+  YP  KI + QTG + R +G  ++  +L    G+   AV S+
Sbjct: 164 LANNSTTNRTKGVKEVLTKYPGIKIEQEQTGIWLRDRGMTLVNDWL--TQGRDFQAVLSN 221

Query: 217 NDEMALGAVQAIKEAGLKPGKDILIVSVDGVPDYFKAMADGDVNAT 262
           NDEMA+GA  A+K AG    K +LI  VDG PD   A+  GD+  +
Sbjct: 222 NDEMAIGAAMALKSAG---KKGVLIAGVDGTPDGLNAITKGDMTVS 264