Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 308 a.a., rhizopine-binding protein from Pseudomonas simiae WCS417

 Score =  127 bits (318), Expect = 4e-34
 Identities = 86/281 (30%), Positives = 148/281 (52%), Gaps = 7/281 (2%)

Query: 8   TALGLWAVSATCAYATTVGFSQVGSESGWRTSFSEAVKAEAKQRGIDLKFADAQQKQENQ 67
           T L L++  +  AY   V  ++V  +  + T     ++A A+Q+ + ++F DAQ     Q
Sbjct: 10  TLLLLFSQWSFAAYRIGVSIARV--DDNFMTYVRTGLEAAARQQDVQIQFEDAQGDVVRQ 67

Query: 68  IKAVRSFIAQGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVDDDSLFLTRIAS 127
           +  V  F+ Q VDA+I+ PV       + + A  AK P+V V+R+         +  +AS
Sbjct: 68  LNQVEGFLNQKVDAVIVLPVDTAATANMTRAAVAAKTPLVYVNRHPDERTLPKGVVTVAS 127

Query: 128 DFSEEGRKIGQWLMDKTQGNCDIAELQGTVGATAAIDRAAGFNQVIANYPNAKIVRSQTG 187
           +  E G+   ++L +K  G  ++A + G +   A  DR  G  QV+ ++P  K+V  Q+ 
Sbjct: 128 NDIEAGQLQMRYLAEKLAGKGNVAIIMGDLAQNATHDRTEGAKQVLKDFPGIKVVEQQSA 187

Query: 188 EFTRAKGKEVMEGFLKAQNGQPLCAVWSHNDEMALGAVQAIKEAGLKPGKDILIVSVDGV 247
           ++ R+KG ++   +L A  G    A+ ++NDEMA+GA  A+++AG   G D+ IV +DG+
Sbjct: 188 DWQRSKGMDLTSNWLLA--GTQFDAIVANNDEMAIGAAMALQQAGKAKG-DVAIVGIDGL 244

Query: 248 PDYFKAMADGDVNATVELSPYLGGPAFDAIDAYLKGNKDQA 288
           PD   A+  G + A+V   P     A  A+ A ++  K +A
Sbjct: 245 PDGLAAIKRGLLTASVFQDP--KAQATQAVQAAVRMIKGEA 283