Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 321 a.a., Galactofuranose ABC transporter, substrate-binding protein from Variovorax sp. SCN45

 Score =  317 bits (813), Expect = 2e-91
 Identities = 167/307 (54%), Positives = 222/307 (72%), Gaps = 6/307 (1%)

Query: 9   ALG-LWAVSATCAYATTVGFSQVGSESGWRTSFSEAVKAEAKQRGIDLKFADAQQKQENQ 67
           ALG +  VS        +GF+QVG+ES WRT+ +E++K+ AK  GI+LKF+DAQQKQENQ
Sbjct: 16  ALGSMLPVSVFAQKKLVLGFAQVGAESEWRTANTESIKSSAKDAGIELKFSDAQQKQENQ 75

Query: 68  IKAVRSFIAQGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVDDDSLFLTRIAS 127
           IKA+RS+IAQ VD I  +PVVE+GW+ VL+EAK AKIPVV+ DR++   DDSL++T + S
Sbjct: 76  IKAIRSYIAQKVDVIAFSPVVESGWETVLREAKAAKIPVVLTDRSVSTKDDSLYVTFMGS 135

Query: 128 DFSEEGRKIGQWLMDK---TQGNCDIAELQGTVGATAAIDRAAGFNQVIANYPNAKIVRS 184
           DF EEGRK G+WL++K    +G+ +I ELQGTVG+  AIDR  GF ++I   P  KI+RS
Sbjct: 136 DFIEEGRKAGRWLVEKMKDQKGDVNIVELQGTVGSAPAIDRKKGFEEIIKADPKFKIIRS 195

Query: 185 QTGEFTRAKGKEVMEGFLKAQNGQPLCAVWSHNDEMALGAVQAIKEAGLKPGKDILIVSV 244
           QTG+FTRAKGKEVME FLKA +G+ +  +++HND+MA+GA+QAI+EAGLKP KDI+I+S+
Sbjct: 196 QTGDFTRAKGKEVMEAFLKA-DGKKINVLFAHNDDMAIGAIQAIEEAGLKPAKDIVIISI 254

Query: 245 DGVPDYFKAMADGDVNATVELSPYLGGPAFDAIDAYLKGNKDQAKLISTTGDVFTQETAA 304
           DGV   F+AM  G +N +VE SP LG     A+   +K  K   K I T   +F  E AA
Sbjct: 255 DGVKGAFEAMIAGKLNVSVECSPLLGPQLMQAVKD-IKDGKTLPKRIVTVESIFPMEVAA 313

Query: 305 AEYEKRR 311
            E+  R+
Sbjct: 314 KEFPNRK 320