Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 311 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas fluorescens SBW25

 Score =  135 bits (341), Expect = 1e-36
 Identities = 83/226 (36%), Positives = 122/226 (53%), Gaps = 3/226 (1%)

Query: 37  RTSFSEAVKAEAKQRGIDLKFADAQQKQENQIKAVRSFIAQGVDAIIIAPVVETGWKPVL 96
           R    +  K+  K  G+ L+F DA+     Q+  V +FI+Q VDAII+ PV     K ++
Sbjct: 44  REDMDKQAKSYPKGDGVQLQFEDARADVVKQLSQVENFISQKVDAIIVNPVDTASTKNII 103

Query: 97  KEAKRAKIPVVIVDRNIKVDDDSLFLTRIASDFSEEGRKIGQWLMDKTQGNCDIAELQGT 156
             A +A IP+V V+R     D    +  + SD  E GR   Q++ +K  G   I  L G 
Sbjct: 104 NAATKAGIPLVFVNRRPDQKDLPKDVVAVTSDDIEAGRLQMQYIAEKLGGKGKIVILLGD 163

Query: 157 VGATAAIDRAAGFNQVIANYPNAKIVRSQTGEFTRAKGKEVMEGFLKAQNGQPLCAVWSH 216
           +   +  +R  G  +V+A YP+ KI + QTG + R KG  ++  +L    G+   AV ++
Sbjct: 164 LANNSTTNRTKGVKEVLAKYPDIKIEQEQTGIWLRDKGMTLVNDWL--TQGREFNAVLAN 221

Query: 217 NDEMALGAVQAIKEAGLKPGKDILIVSVDGVPDYFKAMADGDVNAT 262
           NDEMA+GA  A+K AG KPG  +LI  VDG PD   A+  GD+ A+
Sbjct: 222 NDEMAIGASMALKSAGTKPG-SVLIAGVDGTPDGLNAITKGDMAAS 266