Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 308 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas fluorescens SBW25

 Score =  127 bits (318), Expect = 4e-34
 Identities = 84/266 (31%), Positives = 140/266 (52%), Gaps = 4/266 (1%)

Query: 2   KHNKIITALGLWAVSATCAYATTVGFSQVGSESGWRTSFSEAVKAEAKQRGIDLKFADAQ 61
           +++ I+  L L     T A A  +G S    +  + T     ++A AKQ+ + ++F DAQ
Sbjct: 3   RYSLIVATLVLLFSQWTFA-AYRIGVSIARVDDNFMTYVRTGLEAAAKQQDVQIQFEDAQ 61

Query: 62  QKQENQIKAVRSFIAQGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVDDDSLF 121
                Q+  V  F+ Q VDA+I+ PV       + + A  AK P+V V+R+         
Sbjct: 62  GDVVRQLNQVEGFLNQKVDAVIVLPVDTAATANMTRAAVAAKTPLVYVNRHPDERTLPKG 121

Query: 122 LTRIASDFSEEGRKIGQWLMDKTQGNCDIAELQGTVGATAAIDRAAGFNQVIANYPNAKI 181
           +  +AS+  E G+   ++L +K  G  ++A + G +   A  DR  G  QV+ ++P  K+
Sbjct: 122 VVTVASNDIEAGQLQMRYLAEKLGGKGNVAIIMGDLAQNATHDRTEGAKQVLKDFPGIKV 181

Query: 182 VRSQTGEFTRAKGKEVMEGFLKAQNGQPLCAVWSHNDEMALGAVQAIKEAGLKPGKDILI 241
           V  Q+ E+ R+KG ++   +L A  G    A+ ++NDEMA+GA  A+++AG   G +I I
Sbjct: 182 VEQQSAEWQRSKGMDLTSNWLLA--GTQFDAIVANNDEMAIGAAMALQQAGKTKG-EIAI 238

Query: 242 VSVDGVPDYFKAMADGDVNATVELSP 267
           V +DG+PD   A+  G + A+V   P
Sbjct: 239 VGIDGLPDGLAAIKRGMLTASVFQDP 264