Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 296 a.a., Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  133 bits (334), Expect = 6e-36
 Identities = 92/286 (32%), Positives = 144/286 (50%), Gaps = 11/286 (3%)

Query: 6   IITALGLWA-VSATCAYATTVGFSQVGSESGWRTSFSEAVKAEAKQRGIDLKFADAQQKQ 64
           +++A+ L A VSA      T+        + +  S  +  + EA + G +L   D+Q   
Sbjct: 9   LVSAVALSATVSANAMAKDTIALVISTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNP 68

Query: 65  ENQIKAVRSFIAQGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVDDDSLFLTR 124
             ++  V+    +G   ++I P         +K A +AKIPV+ +DR     D    ++ 
Sbjct: 69  AKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQAKIPVITLDRQATKGD---VVSH 125

Query: 125 IASDFSEEGRKIGQWLMDKTQGNCDIAELQGTVGATAAIDRAAGFNQVIANYPNAKIVRS 184
           IASD    G+  G ++  K      + ELQG  G +AA +R  GF Q +A +    ++ S
Sbjct: 126 IASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLAS 184

Query: 185 QTGEFTRAKGKEVMEGFLKAQNGQPLCAVWSHNDEMALGAVQAIKEAGLKPGKDILIVSV 244
           Q  +F R KG  VM+  L A     + AV++ NDEMALGA++A++ AG     D+++V  
Sbjct: 185 QPADFDRTKGLNVMQNLLTAH--PDVQAVFAQNDEMALGALRALQTAG---KADVMVVGF 239

Query: 245 DGVPDYFKAMADGDVNATV-ELSPYLGGPAFDAIDAYLKGNKDQAK 289
           DG PD  KA+ DG + AT+ +L   +G    +  D  LKG K QAK
Sbjct: 240 DGTPDGEKAVKDGKLAATIAQLPDQIGAKGVEVADKVLKGEKVQAK 285