Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 318 a.a., predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  357 bits (917), Expect = e-103
 Identities = 180/308 (58%), Positives = 231/308 (75%), Gaps = 2/308 (0%)

Query: 6   IITALGLWAVSATCAYATTVGFSQVGSESGWRTSFSEAVKAEAKQRGIDLKFADAQQKQE 65
           I++A+     S   A   TVGFSQVGSESGWR + +   K+EA++RGI LK AD QQKQE
Sbjct: 7   IVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQE 66

Query: 66  NQIKAVRSFIAQGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVDDDSLFLTRI 125
           NQIKAVRSF+AQGVDAI IAPVV TGW+PVLKEAK A+IPV ++DR+I V D SL++T +
Sbjct: 67  NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTV 126

Query: 126 ASDFSEEGRKIGQWLMDKTQGN-CDIAELQGTVGATAAIDRAAGFNQVIANYPNAKIVRS 184
            +D   EG+ IG WL+ +  G  C++ ELQGTVGA+ AIDR  GF + I N PN KI+RS
Sbjct: 127 TADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRS 186

Query: 185 QTGEFTRAKGKEVMEGFLKAQ-NGQPLCAVWSHNDEMALGAVQAIKEAGLKPGKDILIVS 243
           Q+G+FTR+KGKEVME F+KA+ NG+ +C V++HND+M +GA+QAIKEAGLKPGKDIL  S
Sbjct: 187 QSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGS 246

Query: 244 VDGVPDYFKAMADGDVNATVELSPYLGGPAFDAIDAYLKGNKDQAKLISTTGDVFTQETA 303
           +DGVPD +KAM DG+ NA+VEL+P + GPAFDA++ Y K      KL  T   ++  +TA
Sbjct: 247 IDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTA 306

Query: 304 AAEYEKRR 311
             E EK++
Sbjct: 307 KEELEKKK 314