Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 318 a.a., ABC transporter substrate-binding protein from Erwinia tracheiphila SCR3

 Score =  291 bits (744), Expect = 2e-83
 Identities = 147/276 (53%), Positives = 198/276 (71%), Gaps = 2/276 (0%)

Query: 20  AYATTVGFSQVGSESGWRTSFSEAVKAEAKQRGIDLKFADAQQKQENQIKAVRSFIAQGV 79
           A   TVGF+QVGSESGWR + +     +A +R I LK  DAQQKQENQI AVRSFI Q V
Sbjct: 21  AVPLTVGFAQVGSESGWRAAETREASIQASRRSIRLKIDDAQQKQENQINAVRSFITQHV 80

Query: 80  DAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVDDDSLFLTRIASDFSEEGRKIGQW 139
           DAI IAPV ++GW  VL +AK+A+IPV ++ R + V D SL+L+ + +D   EG+ IG W
Sbjct: 81  DAIFIAPVGQSGWDGVLTQAKKARIPVFLLGRPVVVQDKSLYLSLVTADNVYEGKLIGDW 140

Query: 140 LMDKTQGN-CDIAELQGTVGATAAIDRAAGFNQVIANYPNAKIVRSQTGEFTRAKGKEVM 198
           L     G  C++ ELQGT GA+A  DR  GF   IA+ P+ +I+RS++G++TR+ GK VM
Sbjct: 141 LEKTRSGKPCNVVELQGTAGASAVTDRQKGFADAIASAPHLRIIRSESGDYTRSGGKAVM 200

Query: 199 EGFLKAQ-NGQPLCAVWSHNDEMALGAVQAIKEAGLKPGKDILIVSVDGVPDYFKAMADG 257
             F+ A+ NG+ +C V++HND+MALGA++AIKEAGL+PGKDILI S+DGVPD ++AM  G
Sbjct: 201 ARFIHAENNGKNICMVFAHNDDMALGAIEAIKEAGLRPGKDILIGSIDGVPDIYRAMLAG 260

Query: 258 DVNATVELSPYLGGPAFDAIDAYLKGNKDQAKLIST 293
           + NATVEL+  + GPAFDA++ + K     A++I T
Sbjct: 261 EANATVELTTNMAGPAFDALEKFKKDGTQPARIIKT 296