Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 296 a.a., D-ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor from Escherichia coli BL21

 Score =  130 bits (326), Expect = 5e-35
 Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 11/286 (3%)

Query: 6   IITALGLWA-VSATCAYATTVGFSQVGSESGWRTSFSEAVKAEAKQRGIDLKFADAQQKQ 64
           +++A+ L A VSA      T+        + +  S  +  + EA + G +L   D+Q   
Sbjct: 9   LVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNP 68

Query: 65  ENQIKAVRSFIAQGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVDDDSLFLTR 124
             ++  V+    +G   ++I P         +K A +A IPV+ +DR     +    ++ 
Sbjct: 69  AKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE---VVSH 125

Query: 125 IASDFSEEGRKIGQWLMDKTQGNCDIAELQGTVGATAAIDRAAGFNQVIANYPNAKIVRS 184
           IASD    G+  G ++  K      + ELQG  G +AA +R  GF Q +A +    ++ S
Sbjct: 126 IASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KFNVLAS 184

Query: 185 QTGEFTRAKGKEVMEGFLKAQNGQPLCAVWSHNDEMALGAVQAIKEAGLKPGKDILIVSV 244
           Q  +F R KG  VM+  L A     + AV++ NDEMALGA++A++ AG     D+++V  
Sbjct: 185 QPADFDRTKGLNVMQNLLTAH--PDVQAVFAQNDEMALGALRALQTAG---KSDVMVVGF 239

Query: 245 DGVPDYFKAMADGDVNATV-ELSPYLGGPAFDAIDAYLKGNKDQAK 289
           DG PD  KA+ DG + AT+ +L   +G    +  D  LKG K QAK
Sbjct: 240 DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 285