Pairwise Alignments

Query, 219 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

Subject, 233 a.a., Integral membrane protein, interacts with FtsH from Variovorax sp. SCN45

 Score =  139 bits (350), Expect = 4e-38
 Identities = 78/216 (36%), Positives = 127/216 (58%), Gaps = 5/216 (2%)

Query: 5   TLYSASASTLEVNKLLKNTYLLLAMTLAFSALCAGLAMALNISPLMSLGLSI-----GGL 59
           T Y    +  E  ++L+NTY LLA++L  + L A + ++  I+  ++ GL +     G  
Sbjct: 12  TGYGQPLAQAERQRVLRNTYWLLALSLLPTVLGAWVGVSTGITRSLTGGLGLIVFLGGAF 71

Query: 60  VLLFVTLRKADSAAGIFWVFAFTGMEGASLGYMLNHYAGMTNGSELIMQALGLTSVIFIA 119
             +F   +  +SAAG+  +  FT   G  L  ++    G  NGSELIM A G T+ +F  
Sbjct: 72  GFMFAIEKTKNSAAGVPVLLGFTFFMGLMLSRLIAMVLGFKNGSELIMTAFGGTAGVFFV 131

Query: 120 LSAYAVTTKKDFSFLRGFLFAGLIVVIAAALINIFVGNSVAFMAINAGLALLMTGFILFD 179
           +++ A   K+D S +  FLF G +V++  A+IN+FVG+S   + I+     + + ++L+D
Sbjct: 132 MASLATIIKRDLSGMGKFLFVGAMVLMFGAIINVFVGSSTGMLVISVAAIGIFSAYMLYD 191

Query: 180 TSRIVNGGETNYIRATISLYLDFLNLFIAILHLLGI 215
             +I++GGETNYI AT++LYLD  N+F ++L LLGI
Sbjct: 192 LKQIMDGGETNYITATLALYLDLFNVFQSLLALLGI 227