Pairwise Alignments

Query, 716 a.a., peptidyl-dipeptidase Dcp (RefSeq) from Shewanella sp. ANA-3

Subject, 686 a.a., peptidyl-dipeptidase from Agrobacterium fabrum C58

 Score =  508 bits (1309), Expect = e-148
 Identities = 273/671 (40%), Positives = 403/671 (60%), Gaps = 16/671 (2%)

Query: 52  PDFSVIKDEHFQPALEQGIKEHYQEILAIANNPAAPTFDNTIVAMEKSGALLTRASSVFY 111
           P F  +KDE F PA +  +  H QEI AIA NP AP+F+NT+ A+E +G  L+R SS+F+
Sbjct: 21  PKFDAVKDEDFAPAFDAALFSHEQEIDAIAGNPEAPSFENTVTALEIAGDELSRISSLFW 80

Query: 112 NLAGSNSNPALRKIQGEMAPKMAAHSDNINLNPALFARIETIYNDRNNLGLTSEAVRLVE 171
           N AG+N+N  ++ ++ E+APKM+ H   I +N ALF RI+T++  R  LGLT E  R++E
Sbjct: 81  NKAGANTNGVIQALEREIAPKMSRHYSKIGMNEALFKRIDTLWEKREALGLTGEEKRVLE 140

Query: 172 VYHQRFIMAGAKLTDEQKVKIRALNEEQSTLTNEFSQRLLRLTKEIAIVVDNKEQLAGLT 231
            + + F+ +GAKL  E++ ++ A+NEE + L  +F Q +L   K   +++   E+LAG+ 
Sbjct: 141 RHWKGFVHSGAKLPKERQERLAAINEELAGLGAKFGQNVLADEKSWKLLLSTDEELAGIP 200

Query: 232 DSEITSAANDAKAAGHEGKYLINITNTTRQPVLASLENRELRQRIWEASANRGLT-GENE 290
                + A  A   G +GK+ + ++ +  +P L   E R+LR++ ++A   RG   GE +
Sbjct: 201 GFLRDAMAGAAGEHGEDGKFAVTLSRSIIEPFLTFSERRDLREQAFKAWVARGENGGETD 260

Query: 291 TASLVSRLAQLRAERAALLGYENWASYRLAPQMAKTPEAVYSMFGSMVPAVVANTEKEAA 350
              +V R  +LR E+A LLGY N+A+Y+L   MAKTP+AV  +   +    V    +E A
Sbjct: 261 NREIVRRTLELREEKAKLLGYANFAAYKLDDTMAKTPDAVNGLLRQVWEKAVQRAGEEEA 320

Query: 351 DIQAMIDKTGGKFELAPWDWEFYAEKVRQEKYALDANSIRPYFEFNRVLEDGVFYTLKEL 410
            + A+I + G   E+ PWDW  YAEK+R +K+      ++PY +  +++E   F   + L
Sbjct: 321 GLAAIIAEEGKNHEVLPWDWRHYAEKLRAQKFNFSEAELKPYLQLEKIIE-ACFDVAERL 379

Query: 411 YGVTLKPRPDLPVYHPDVKAYEMFDADGSSMAIFYADYFAREGKRGGAWMSSFAGQSFLE 470
           +G+       +  YHPDV+ +E+ D  G   A+F  DYFAR  KR GAWMSSF  Q  L 
Sbjct: 380 FGIHAVEVKGVVGYHPDVRIFEIRDNKGDLKAMFLGDYFARPSKRSGAWMSSFQSQHKLP 439

Query: 471 ------GTKPVVVNVMNIKKAPEGQPTFVSYNEVTTMFHEMGHGTHGMFSKVTYPSLAGT 524
                 G  P++ NV N  K  EG+P  +S ++  T+FHE GH  HGM S VTYPS++GT
Sbjct: 440 LKDGTVGEIPIIYNVCNFAKPAEGKPALLSLDDARTLFHEFGHALHGMLSDVTYPSVSGT 499

Query: 525 SVSRDFVEFPSTFEEDWAAHPKVLANYAKHYETGKPIPDDLLQKLLKSGSFNQGFDTLEY 584
            VSRDFVE PS   E W   P++L  YA HYETG P+P  LL K+L + +FN GF+T+E+
Sbjct: 500 GVSRDFVELPSQLYEHWLTVPEILEKYALHYETGAPMPKALLDKVLAAQTFNAGFNTVEF 559

Query: 585 MAAALVDMEWHSLSPDAPLQDVATFEANALKKHGLNI-TAVPPRYKSTYFAHAFPG-GYS 642
            ++A+VDM +H+    A   D    +   L   GLN+  ++  R+ + +F H F G GYS
Sbjct: 560 TSSAIVDMAFHTRDSVA---DPMAVQGEVLS--GLNMPKSIVMRHATPHFQHVFSGDGYS 614

Query: 643 ASYYAYMWSEILAADAF-AYVQTQGGLNREIGMKYRKTIREVGNSIAPMEAYKNFRGQEP 701
           A YY+YMWSE+L ADAF A+ +T    + E+  + +  I  VG SI P EAY  FRG+ P
Sbjct: 615 AGYYSYMWSEVLDADAFAAFEETGNAFDGEMARRLKDNIYSVGGSIDPEEAYLAFRGKMP 674

Query: 702 TTEGLLNRRGL 712
           + + +L +RGL
Sbjct: 675 SPDAMLLKRGL 685