Pairwise Alignments

Query, 409 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

Subject, 629 a.a., Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  358 bits (920), Expect = e-103
 Identities = 193/419 (46%), Positives = 268/419 (63%), Gaps = 10/419 (2%)

Query: 1   MSFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPIL 60
           MSF++L L   LV  +   GY QPTP+Q  AIPA+L  +D+M  AQTGTGKT  FALPIL
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  QQL----LIDNESQDAPKDVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIE 116
           ++L    + D   +  P+  R LVL PTRELA QV +SF  YA+         +GGV + 
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 117 AQQAEFKAGIDVLIATPGRLLDHLRQGALNLKRLSVLVFDEADRMLDMGFMDEIKAVLKQ 176
            Q      G+DVL+A PGRLLD   QG+++L  + +LV DEADRMLDMGF+ ++K VL +
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 177 VPAQRQTLLFSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDSDRKTEFV 236
           +PA+RQ LLFSAT  + I   +  LL +P+ IEV   NTT  ++EQRV+ + ++ K   +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLL 240

Query: 237 SHLVRSKNWQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLV 296
           +HL+    W+QVL+F+RTK G ++L   L++ G+A  A HG+ SQ AR K L DFK G V
Sbjct: 241 AHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV 300

Query: 297 QVLVATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALL 356
           +++VATD+AARGLDI  L +V+NFELP + EDY+HRIGRTGRAG +G AI+L + ++  L
Sbjct: 301 RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 357 LEEVEALLDKRLPQQWYPGFEPDFNKME-PEPR-----RNSKAAQKQRAKKRALGGKKR 409
           L+ +E +  +++      GF+    + E PE R     RNS+ A+  R       G +R
Sbjct: 361 LKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGGRR 419