Pairwise Alignments

Query, 409 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

Subject, 627 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas sp. S08-1

 Score =  364 bits (935), Expect = e-105
 Identities = 200/428 (46%), Positives = 268/428 (62%), Gaps = 19/428 (4%)

Query: 1   MSFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPIL 60
           MSF +L L   L N +   GY QPTP+Q  AIPA+L  +D+M  AQTGTGKTA FALPIL
Sbjct: 1   MSFVSLGLSEALANAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPIL 60

Query: 61  QQLLI----DNESQDAPKDVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIE 116
           ++L      D E +  PK  R LVL PTRELA QV  SF  YA+         +GGV + 
Sbjct: 61  ERLFPNGHPDREHRHGPKQPRVLVLTPTRELAAQVHDSFKVYARDLKFVSACIFGGVGMN 120

Query: 117 AQQAEFKAGIDVLIATPGRLLDHLRQGALNLKRLSVLVFDEADRMLDMGFMDEIKAVLKQ 176
            Q      G+DVL+A PGRLLD + Q A++L  + +LV DEADRMLDMGF+ ++K VL +
Sbjct: 121 PQVQALAKGVDVLVACPGRLLDLVNQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 177 VPAQRQTLLFSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDSDRKTEFV 236
           +PAQRQ LLFSAT    I   +  LL +P+ IEV   NTT  ++EQRV+ + +  K   +
Sbjct: 181 LPAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240

Query: 237 SHLVRSKNWQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLV 296
           +HL+    W+QVL+F+RTK G ++L   L++ G+   A HG+ SQ AR K L DFK   V
Sbjct: 241 AHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKANQV 300

Query: 297 QVLVATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALL 356
           ++LVATD+AARGLDI  L +V+NFELP + EDY+HRIGRTGRAG +G AI+L + ++  L
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 357 LEEVEALLDKRLPQQWYPGFEPDFNKME------PEPRRNSKAAQKQRAKK---RALG-- 405
           L+ +E +  +R+P     GF+P   ++E      P P R  +A + +   K   +A G  
Sbjct: 361 LKGIERMTKQRIPDGDTLGFDPASVEVEKPEVRGPRPERQPRADRPRHEAKHEPKAAGEA 420

Query: 406 ----GKKR 409
               GKKR
Sbjct: 421 GEGQGKKR 428