Pairwise Alignments

Query, 409 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

Subject, 455 a.a., ATP-dependent RNA helicase RhlE from Escherichia coli ECRC98

 Score =  398 bits (1023), Expect = e-115
 Identities = 202/407 (49%), Positives = 282/407 (69%), Gaps = 1/407 (0%)

Query: 1   MSFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPIL 60
           MSF +L L   ++  +AE GY++PTPIQ +AIPA+L  +D+MA AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  QQLLIDNESQDAPKDVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120
           Q L+         + VRAL+L PTRELA Q+ ++   Y+K  +IR  + +GGVSI  Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 121 EFKAGIDVLIATPGRLLDHLRQGALNLKRLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQ 180
           + + G+DVL+ATPGRLLD   Q A+ L ++ +LV DEADRMLDMGF+ +I+ VL ++PA+
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 181 RQTLLFSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDSDRKTEFVSHLV 240
           RQ LLFSAT  D I   ++ LL +P  IEVA+RNT + QV Q V+ +D  RK E +SH++
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240

Query: 241 RSKNWQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLV 300
              NWQQVL+F+RTK G + L  QLN+ G+ + A HG+ SQGAR + L DFK G ++VLV
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 301 ATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360
           ATD+AARGLDI +L +V+N+ELP + EDY+HRIGRTGRA + G A++L   ++  LL ++
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 361 EALLDKRLPQQWYPGFEPDFNKMEPEPRRNSKAAQKQRAKKRALGGK 407
           E LL K +P+   PG+EPD   ++ EP +N +  +    + +  GG+
Sbjct: 361 EKLLKKEIPRIAIPGYEPD-PSIKAEPIQNGRQQRGGGGRGQGGGGR 406