Pairwise Alignments

Query, 861 a.a., DNA mismatch repair protein MutS (RefSeq) from Shewanella sp. ANA-3

Subject, 857 a.a., DNA mismatch repair protein MutS from Pseudomonas putida KT2440

 Score =  960 bits (2482), Expect = 0.0
 Identities = 499/857 (58%), Positives = 631/857 (73%), Gaps = 7/857 (0%)

Query: 8   DLEKHTPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGDP 67
           DL  HTPMM+QY  +K +H D L+FYRMGDFYE+FY+DAK+A++LL I+LTARG+S G  
Sbjct: 3   DLSAHTPMMQQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 62

Query: 68  IPMAGIPYHAVEGYLAKLVQIGQSVAICEQIGDPATSKGPVERKVVRIVTPGTLTDEALL 127
           IPM GIP+H++EGYLAKLV++G+SV ICEQIGDPATSKGPVER+VVRI+TPGT++DEALL
Sbjct: 63  IPMCGIPFHSLEGYLAKLVKLGESVVICEQIGDPATSKGPVERQVVRIITPGTVSDEALL 122

Query: 128 QERQDNLLAAVYQGKVGFGYATLDVSSGRFVIAELETKESLEAELQRTNPVEILYSEDFG 187
            ER+DNL+AA+   +  FG A LD++SG F + E++  E+L AEL+R NPVE+L  +D+ 
Sbjct: 123 DERRDNLIAALLGDERLFGLAVLDITSGNFSVQEIKGWENLLAELERLNPVELLIPDDWP 182

Query: 188 AMELLHHFKGKRRRPEWEFDYDTSIKLLLAQFGTKDLHGFGITDARLSLQAAGCLMQYVK 247
                    G RRR  W+FD D++ K L  QF TKDL GFG     L++ AAGCL+ Y K
Sbjct: 183 RDLPAEKRPGARRRAPWDFDRDSARKALCQQFATKDLKGFGCDKLTLAIGAAGCLLTYAK 242

Query: 248 DTQRTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGRDNTLAAVLDNTATAMGSR 307
           +TQRTALPH+ ++      DT++LD A+RRNLEL  NL+GGRDNTL +V+D   TAM SR
Sbjct: 243 ETQRTALPHLRSLRHERLDDTVILDGASRRNLELDINLAGGRDNTLQSVIDRCQTAMASR 302

Query: 308 MLQRWIHQPLRDHAQIFARQTAVNELLETTAHESLHDQLKALGDIERIMARLALRTARPR 367
           +L RW+++PLRD   + ARQ ++  LL++   E L  QLK +GDIERI+AR+ LR ARPR
Sbjct: 303 LLSRWLNRPLRDLKVLQARQDSIRCLLDSYRFEKLQPQLKEIGDIERILARIGLRNARPR 362

Query: 368 DFARLRQALNLLPQLQQSLAQLSAPHTVKLGQLLGEFPEEQQLLERAIVDNPPMLIRDGG 427
           D ARLR AL  LP+LQ ++ +L APH  +L  + G +PE   LLERAI+DNPP +IRDGG
Sbjct: 363 DLARLRDALGALPELQNAMTELEAPHLARLAAITGTYPELASLLERAIIDNPPAVIRDGG 422

Query: 428 VIREGYNAELDEWRGLSEGATDYLVQLEAREKERTGIATLKVGYNRVHGYYIEVSRLQSQ 487
           V++ GY+ ELDE   +SE A  +L+ LEAREK RTG+A LKVGYNRVHGY+IE+   Q++
Sbjct: 423 VLKAGYDNELDELLAISENAGQFLIDLEAREKARTGLANLKVGYNRVHGYFIELPTKQAE 482

Query: 488 QVPLNYQRRQTLKNMERYITPELKEYEEKVLSSQGKALALEKQLWDELFDLILPKLHELQ 547
           Q P +Y RRQTLK  ER+ITPELK +E+K LS++ +ALA EK L+D L + ++  L  LQ
Sbjct: 483 QAPGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDALLETLISHLAPLQ 542

Query: 548 AFARAAAELDVLSNFAERAETLGYTCPELSSEIGVKIEAGRHPVVERVSQTPFIANPVTL 607
             A A AELDVLSN AERA  L   CP    E  ++IE GRHPVVE+V  TPF+AN + L
Sbjct: 543 DSAAALAELDVLSNLAERALNLDLNCPRFVDEPCLRIEQGRHPVVEQVLTTPFVANDLGL 602

Query: 608 HNQRRMLIVTGPNMGGKSTYMRQVALITLMAHIGCFVPADRAIIGPIDRIFTRIGASDDL 667
            N  RMLI+TGPNMGGKSTYMRQ ALI L+AHIG FVPA    +  +DRIFTRIG+SDDL
Sbjct: 603 DNSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDL 662

Query: 668 ASGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMT 727
           A GRSTFMVEM+ETANILHNAT +SLVLMDE+GRGTST+DGLSLAW+AAE LA Q+ A T
Sbjct: 663 AGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLSLAWAAAERLA-QLRAYT 721

Query: 728 LFATHYFELTQLPELMAGVYNVHLDAIEHEDTIAFMHAVQEGAASKSYGLQVAALAGVPA 787
           LFATHYFELT LPE    V NVHL+A EH + I F+H V  G AS+SYGL VA LAGVP 
Sbjct: 722 LFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPT 781

Query: 788 RVIKAAKHKLHQLE--SRDHQVEGAN--VNGTRAPIQTLLALPEPVENPAVSKLKDINPD 843
            VI+ A+  L +LE  S  H+   A+   +  + P Q+ L    P  +PA+ KL  +  D
Sbjct: 782 AVIQRAREHLGRLETTSLPHEQPAAHKAKDAPQVPHQSDLFASLP--HPAIEKLGKLQLD 839

Query: 844 NLTPKQALDLLYELKRL 860
           ++TP+QA+++LY+LK L
Sbjct: 840 DMTPRQAIEMLYQLKNL 856