Pairwise Alignments

Query, 861 a.a., DNA mismatch repair protein MutS (RefSeq) from Shewanella sp. ANA-3

Subject, 883 a.a., DNA mismatch repair protein, MutS family from Agrobacterium fabrum C58

 Score =  569 bits (1467), Expect = e-166
 Identities = 361/892 (40%), Positives = 510/892 (57%), Gaps = 61/892 (6%)

Query: 15  MMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGDPIPMAGIP 74
           MM QY+ +KA +   LLFYRMGDFYELF+DDA  AS  LGI+LT RG+  G  IPM G+P
Sbjct: 1   MMEQYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVP 60

Query: 75  YHAVEGYLAKLVQIGQSVAICEQIGDPAT-----SKGPVERKVVRIVTPGTLTDEALLQE 129
            HA + YL KL+  G  VA+CEQI DPA      SK  V+R VVR+VTPGTLT+E LL  
Sbjct: 61  VHAADDYLQKLILRGYRVAVCEQIEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEEKLLSP 120

Query: 130 RQDNLLAAVYQ----GKVGFGYATLDVSSGRFVIAELETKESLEAELQRTNPVEILYSED 185
            + N L A+ +     +  F  A +D+S+G F +AE  T   L A++ R +P E++ ++ 
Sbjct: 121 TESNYLMALARIRGSAEAQFALAWIDISTGVFRLAET-TLTRLLADIWRIDPRELIVADS 179

Query: 186 -FGAMELLHHFKGKRR----RPEWEFDYDTSIKLLLAQFGTKDLHGFGITDARLSLQAAG 240
            F   EL   F    R    +P   FD   +   +   F    L GFG T +R+ + AA 
Sbjct: 180 LFHDEELRPVFDVLGRVAVPQPAILFDSAVAEGRIARYFNVSTLDGFG-TFSRVEMAAAA 238

Query: 241 CLMQYVKDTQRTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGRDNTLAAVLDNT 300
             + YV+ TQ    P + A  R +   T+ +D ATR NLEL + LSG RD +L   L+ T
Sbjct: 239 AAVAYVEKTQIAERPPLGAPERESAASTLFIDPATRANLELVKTLSGDRDGSLLHALNRT 298

Query: 301 ATAMGSRMLQRWIHQPLRDHAQIFARQTAVNELLETTAH-ESLHDQLKALGDIERIMARL 359
            T  G+R+L   +  PL D  +I AR  AV  L++  +  + L D LK + D+ R ++RL
Sbjct: 299 VTGGGARLLAERLMSPLTDPERINARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSRL 358

Query: 360 ALRTARPRDFARLRQAL------------NLLP-QLQQSLAQLSAPHTVKLGQLLGEFPE 406
           AL    PRD   +RQ L             LLP +L ++L  L A        L G    
Sbjct: 359 ALERGGPRDLGAIRQGLVSAEKIAVILDGGLLPDELAKALRDLKA--------LPGAL-- 408

Query: 407 EQQLLERAIVDNPPMLIRDGGVIREGYNAELDEWRGLSEGATDYLVQLEAREKERTGIAT 466
            + +L   + D+ P+L RDGG +REG N ELDE R L + +   +  L+ +  + TGI +
Sbjct: 409 -EAMLGSMLADDLPLLKRDGGFLREGANPELDEVRALRDQSRRVIAGLQLQYADETGIKS 467

Query: 467 LKVGYNRVHGYYIEVSR------LQSQQVPLNYQRRQTLKNMERYITPELKEYEEKVLSS 520
           LK+ +N V GY+IEV+       + + +    +  RQT+    R+ T EL + E ++ ++
Sbjct: 468 LKIKHNNVLGYFIEVTAGNADVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIANA 527

Query: 521 QGKALALEKQLWDELFDLILPKLHELQAFARAAAELDVLSNFAERAETLGYTCPELSSEI 580
             +AL +E + ++ + + ++ +   ++A A A A +DV S+ A  A    Y  P + + +
Sbjct: 528 AAEALTMELEAFERMVEAVVQQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDASM 587

Query: 581 GVKIEAGRHPVVE----RVSQTPFIANPVTLH-----NQRRMLIVTGPNMGGKSTYMRQV 631
              I+ GRHPVVE    R S  PFIAN   L          + ++TGPNMGGKST++RQ 
Sbjct: 588 TFSIKGGRHPVVEQALRRQSAGPFIANNCDLSAVNGGKNGAIWLLTGPNMGGKSTFLRQN 647

Query: 632 ALITLMAHIGCFVPADRAIIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQ 691
           ALI ++A IG FVPA+ A IG +DR+F+R+GASDDLA GRSTFMVEM ETA IL+ AT +
Sbjct: 648 ALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDR 707

Query: 692 SLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFATHYFELTQLPELMAGVYNVHL 751
           SLV++DEIGRGT+T+DGLS+AW+A E+L +      LFATH+ ELT L E +  + N  +
Sbjct: 708 SLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATM 767

Query: 752 DAIEHEDTIAFMHAVQEGAASKSYGLQVAALAGVPARVIKAAKHKLHQLESRDHQVEGAN 811
              E E  + F+H V  GAA +SYG+QVA LAG+PA V++ A+  L +LE  D +   + 
Sbjct: 768 RVKEWEGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPASQ 827

Query: 812 VNGTRAPIQTLLALPEPVENPAVSK----LKDINPDNLTPKQALDLLYELKR 859
           +     P+  +    E       SK    LK  NPD +TP++ALD LY LK+
Sbjct: 828 LIDD-LPLFQIAVRREETRKAGPSKVEEALKSFNPDEMTPREALDALYALKK 878