Pairwise Alignments

Query, 317 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

Subject, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas putida KT2440

 Score =  289 bits (739), Expect = 7e-83
 Identities = 151/301 (50%), Positives = 200/301 (66%), Gaps = 7/301 (2%)

Query: 8   RFIDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGEATKFSQH 67
           R + GI+LLDK  G +SN ALQ+V+   NA KAGHTG+LDPLATG+LP+C GEATKFSQ+
Sbjct: 9   RNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQY 68

Query: 68  LLDSDKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTEAQLMSALEHFRGDTQQVPSMYSA 127
           LLDSDK Y    ++GQ T+T D++GEV+QTR +    A + + L  FRG   Q+P MYSA
Sbjct: 69  LLDSDKGYETVMQMGQTTNTGDAEGEVLQTRDVTVGRADIEAVLPRFRGPISQIPPMYSA 128

Query: 128 LKYQGQPLYKYAREGIEVPREARPITVFELNFIGLEGDELTLDIHCSKGTYIRTIIDDLG 187
           LK  GQPLYK AR G  V REAR +T+  L  +  EG    L + CSKGTYIRT+++D+G
Sbjct: 129 LKRDGQPLYKLARAGEVVEREARSVTINRLELLECEGTRARLSVGCSKGTYIRTLVEDIG 188

Query: 188 EMLGCGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDPSSLLDSLLLPMDTAV 247
           E LGCGA+V  LRRTQ   +   + VTLE+LE   A+   E       LD  L+P D+ +
Sbjct: 189 EALGCGAYVAELRRTQAGPFALAQTVTLEELEQAHAEGGNE------ALDRFLMPSDSGL 242

Query: 248 ADFPEVNVPDASAAYLMQGQAVRVSGLVADTLVRITLGTERRFVGIGEMNQDGLLAPKRL 307
            D+P V++ + SA Y + GQAVR        +VR+      RF+GIGE+++DG +AP+RL
Sbjct: 243 QDWPLVSLSEHSAFYWLHGQAVRAPDAPQFGMVRVQ-DHNARFIGIGEVSEDGRIAPRRL 301

Query: 308 V 308
           +
Sbjct: 302 I 302