Pairwise Alignments

Query, 317 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

Subject, 311 a.a., tRNA pseudouridine(55) synthase TruB from Magnetospirillum magneticum AMB-1

 Score =  179 bits (454), Expect = 8e-50
 Identities = 100/277 (36%), Positives = 150/277 (54%), Gaps = 10/277 (3%)

Query: 1   MARRSKGRFIDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGE 60
           MAR+ KG  ++G + +DK  G+ S   + +VKR  NA K GH G LDPLA+G+LP+ LGE
Sbjct: 1   MARKRKGDPVNGWLAIDKPLGIGSTQVVAKVKRLLNAAKVGHGGTLDPLASGILPIALGE 60

Query: 61  ATKFSQHLLDSDKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTEAQLMSALEHFRGDTQQ 120
           ATK  Q+++D  K Y    + G+ T + D + EV++T P   T   + +AL  F G+  Q
Sbjct: 61  ATKTVQYVMDGSKTYRFQVRWGEATASCDRESEVIETSPHRPTAEAIAAALPAFLGEIDQ 120

Query: 121 VPSMYSALKYQGQPLYKYAREGIEVPREARPITVFELNFIGL-EGDELTLDIHCSKGTYI 179
           +P  YSA+K  GQ  Y  AR G EV  + R + +     +G  + D    ++HC KGTY+
Sbjct: 121 IPPAYSAIKIDGQRAYDLARAGEEVEIKPRRVAIKSFTLLGQPDADHADFEVHCGKGTYV 180

Query: 180 RTIIDDLGEMLGCGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDPSSLLDSL 239
           R++  DL   LG   HV +LRR     +     ++LE L         E L       + 
Sbjct: 181 RSLARDLSLALGTVGHVSVLRRIACGPFNEQNAISLESL---------EDLSQVPAPWTF 231

Query: 240 LLPMDTAVADFPEVNVPDASAAYLMQGQAVRVSGLVA 276
           LLP++TA+ D P + + ++ A  L  G  V +S +V+
Sbjct: 232 LLPIETALDDIPALALTESEARRLQSGNPVSISHVVS 268