Pairwise Alignments

Query, 317 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

Subject, 314 a.a., tRNA pseudouridine synthase B (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  407 bits (1047), Expect = e-118
 Identities = 199/306 (65%), Positives = 248/306 (81%)

Query: 4   RSKGRFIDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGEATK 63
           R +GR I G++LLDK  GMSSN  LQ+VKR +NAN+AGHTGALDPLATGMLP+CLGEATK
Sbjct: 5   RRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64

Query: 64  FSQHLLDSDKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTEAQLMSALEHFRGDTQQVPS 123
           FSQ+LLDSDKRY V A+LGQRTDTSD+DG++VQ RP+ F+  QL SALE FRGD +Q+PS
Sbjct: 65  FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPS 124

Query: 124 MYSALKYQGQPLYKYAREGIEVPREARPITVFELNFIGLEGDELTLDIHCSKGTYIRTII 183
           MYSALKYQG+ LY+YAR+GIEVPREARPITV+EL FI  EG+EL L++HCSKGTYIRTII
Sbjct: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTII 184

Query: 184 DDLGEMLGCGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDPSSLLDSLLLPM 243
           DDLGE LGCGAHV  LRR  V+ YP D+MVTLE L+ LVA+A+++ +  + LLD LL+PM
Sbjct: 185 DDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEHLQTLVAQAEQQGVPAAQLLDPLLMPM 244

Query: 244 DTAVADFPEVNVPDASAAYLMQGQAVRVSGLVADTLVRITLGTERRFVGIGEMNQDGLLA 303
           D+  +D+P VN+P  S+ Y   G  VR +G     LVR+T G + +F+G+GE++ +G +A
Sbjct: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDDKFIGMGEIDDEGRVA 304

Query: 304 PKRLVV 309
           P+RLVV
Sbjct: 305 PRRLVV 310