Pairwise Alignments

Query, 317 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

Subject, 308 a.a., tRNA pseudouridine 55 synthase from Kangiella aquimarina DSM 16071

 Score =  313 bits (803), Expect = 3e-90
 Identities = 155/306 (50%), Positives = 218/306 (71%), Gaps = 8/306 (2%)

Query: 3   RRSKGRFIDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGEAT 62
           RR +GR I GI+LLDK T ++SN ALQ+ K  + A KAGHTGALDP+ATG+LP+C GEAT
Sbjct: 4   RRKRGRDITGILLLDKPTDITSNKALQQAKFLYFAAKAGHTGALDPIATGVLPICFGEAT 63

Query: 63  KFSQHLLDSDKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTEAQLMSALEHFRGDTQQVP 122
           KFSQ+LL++DK+Y VTAKLG++T T+D +GEV++++P++ TE QL+  L+ F+G   QVP
Sbjct: 64  KFSQYLLNADKKYRVTAKLGEKTTTADREGEVIESKPVDVTEEQLVKVLQQFKGTISQVP 123

Query: 123 SMYSALKYQGQPLYKYAREGIEVPREARPITVFELNFIGLEGDELTLDIHCSKGTYIRTI 182
           SMYSALK  G PLYK AR+GIEV R+AR + ++ L  +    DE  LD+HCSKGTY+R +
Sbjct: 124 SMYSALKKDGVPLYKLARKGIEVERDAREVDIYSLELVTFSDDEFVLDVHCSKGTYVRNL 183

Query: 183 IDDLGEMLGCGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDPSSLLDSLLLP 242
           ++D+G+ LGCGAHV+ LRRT V  +   + VTL  LE L      +Q+D    +D LLLP
Sbjct: 184 VEDIGDELGCGAHVLELRRTAVGDFNLGQTVTLAHLEEL------KQVDAKLEMDELLLP 237

Query: 243 MDTAVADFPEVNVPDASAAYLMQGQAVRVSGLVADTLVRITLGTERRFVGIGEMNQDGLL 302
           ++ A++  P V + D  A Y+  GQAV+++G+  D  V +    + +F+G+G +N DG +
Sbjct: 238 VEQALSHMPLVQLTDDEAYYIRLGQAVQIAGVPIDGSVGLL--HDDQFIGVGVINDDGKV 295

Query: 303 APKRLV 308
           AP RL+
Sbjct: 296 APSRLI 301