Pairwise Alignments

Query, 317 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

Subject, 309 a.a., tRNA pseudouridine(55) synthase TruB from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  177 bits (449), Expect = 3e-49
 Identities = 106/288 (36%), Positives = 156/288 (54%), Gaps = 11/288 (3%)

Query: 1   MARRSKGRFIDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGE 60
           MAR+ KG  +DG V LDK   M S  A+ R++R FNA KAGH G LDPLA+G+LP+ LGE
Sbjct: 1   MARKKKGDIVDGWVCLDKPFEMGSTEAVSRIRRLFNAQKAGHAGTLDPLASGILPIALGE 60

Query: 61  ATKFSQHLLDSDKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTEAQLMSALEHFRGDTQQ 120
           ATK    ++++ K Y  T   G  TD+ D +GE++    +  T  Q+ +AL  F G+  Q
Sbjct: 61  ATKTVPMMMEAQKVYRFTINWGVSTDSVDREGEIIGRSDVRPTVDQVKAALPAFVGEIDQ 120

Query: 121 VPSMYSALKYQGQPLYKYAREGIEVPREARPITVFELNFIGL-EGDELTLDIHCSKGTYI 179
            P  +SA+K  G   Y  AR+G+E   +AR +T+         + D + + I   KG Y+
Sbjct: 121 TPPRFSAIKVDGARAYDLARDGVEFELQARRVTIHSAEVSDAPDADHVEITIRTGKGVYV 180

Query: 180 RTIIDDLGEMLGCGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDPSSLLDSL 239
           R++  DL  +LG   HV  LRR +V  +     VTL+ LE +V +    +          
Sbjct: 181 RSMARDLAAVLGAEGHVSALRRERVGPFSTQNAVTLDSLEEMVHRGAASE---------G 231

Query: 240 LLPMDTAVADFPEVNVPDASAAYLMQGQAVRVSGLVADTLV-RITLGT 286
           LL + TA+ D PE+ V +  A  L QG+ + +     +TL  R+T G+
Sbjct: 232 LLAVATALDDIPELAVNEQDAFSLRQGRPIVLLPRQVETLKDRLTGGS 279