Pairwise Alignments

Query, 317 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

Subject, 314 a.a., tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase from Escherichia coli BL21

 Score =  407 bits (1045), Expect = e-118
 Identities = 198/306 (64%), Positives = 249/306 (81%)

Query: 4   RSKGRFIDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGEATK 63
           R +GR I+G++LLDK  GMSSN ALQ+VKR +NAN+AGHTGALDPLATGMLP+CLGEATK
Sbjct: 5   RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64

Query: 64  FSQHLLDSDKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTEAQLMSALEHFRGDTQQVPS 123
           FSQ+LLDSDKRY V A+LGQRTDTSD+DG++V+ RP+ F+  QL +AL+ FRGD +Q+PS
Sbjct: 65  FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124

Query: 124 MYSALKYQGQPLYKYAREGIEVPREARPITVFELNFIGLEGDELTLDIHCSKGTYIRTII 183
           MYSALKYQG+ LY+YAR+GIEVPREARPITV+EL FI  EG+EL L+IHCSKGTYIRTII
Sbjct: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184

Query: 184 DDLGEMLGCGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDPSSLLDSLLLPM 243
           DDLGE LGCGAHVI LRR  V+ YP ++MVTLE L  LV +A+++ +  + LLD LL+PM
Sbjct: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244

Query: 244 DTAVADFPEVNVPDASAAYLMQGQAVRVSGLVADTLVRITLGTERRFVGIGEMNQDGLLA 303
           D+  +D+P VN+P  S+ Y   G  VR SG   + LVR+T G   +F+G+GE++ +G +A
Sbjct: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304

Query: 304 PKRLVV 309
           P+RLVV
Sbjct: 305 PRRLVV 310