Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella sp. ANA-3

Subject, 352 a.a., DNA polymerase IV from Pseudomonas fluorescens SBW25

 Score =  326 bits (836), Expect = 5e-94
 Identities = 173/338 (51%), Positives = 227/338 (67%), Gaps = 1/338 (0%)

Query: 2   RKIIHIDMDCYFAAVEMRDFPEYRGKPLAVGGSRVQRGVISTCNYEARKFGVRSAMATGY 61
           RKIIH+D DC++AA+EMRD P    KPLAVGGS  +RGVI+TCNYEAR +GVRSAM++ +
Sbjct: 4   RKIIHVDCDCFYAAIEMRDDPSLAQKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSRH 63

Query: 62  ALKLCPDLILVPGRMQVYKEVSQQIRAIFCRYTELIEPLSLDEAYLDVSDCKLFKGSATL 121
           ALKLCPDL +V  RM  YKE S++I+ IF  YT+LIEPLSLDEAYLDVSD   F GSAT 
Sbjct: 64  ALKLCPDLTIVKPRMDAYKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATR 123

Query: 122 IAEAIRRDILAETGLTASAGVAPIKFLAKVASDLNKPNGQCVIPPDEVAEFVKSLSLRKI 181
           IA+ IRR +  +  +T SAGVAP KFLAK+ASD  KPNG  VI PD+V +FV  L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSQLRVSKL 183

Query: 182 PGVGKVTAEKLSSLGLNTCADVQAYPKQELIARFGKFGTVLVERAHGIDERGISVSRERK 241
            GVGKVTA+KL+ LG+  C  ++ + K  L+  FG FG  L   A G+D+R +     R+
Sbjct: 184 HGVGKVTADKLARLGIEDCLQLREWNKLALVREFGSFGERLWSLARGVDDRVVQNDSRRQ 243

Query: 242 SVGVETTLAQDIYTLEQCQQVMPGLIQELSSRLGRSAKGRQIHKQVVKLKFNDFKQTTIE 301
           S+ VE T   D+  L  C   +P L++ L+ R+ R     +  K  VK+KF+DF QTT+E
Sbjct: 244 SISVENTYDVDLPDLSSCLAKLPELMETLAGRMARIDSSYRAGKPFVKVKFHDFTQTTLE 303

Query: 302 HRSDEVSVVMFYELLSQAMARQEGRGIRLLGVSVGLAE 339
                  +  + +LL+QA  R  G+ +RLLG+ V L +
Sbjct: 304 QAGAGRDLESYQQLLTQAFNR-GGKPVRLLGIGVRLLD 340