Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella sp. ANA-3

Subject, 356 a.a., DNA polymerase IV from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  267 bits (683), Expect = 3e-76
 Identities = 161/342 (47%), Positives = 212/342 (61%), Gaps = 13/342 (3%)

Query: 1   MRKIIHIDMDCYFAAVEMRDFPEYRGKPLAVGGSRVQRGVISTCNYEARKFGVRSAMATG 60
           MRKIIHIDMD +FA+VE RD PE RGKP+AVGGSR  RGV++  +YEARK+GV SA+A+ 
Sbjct: 1   MRKIIHIDMDAFFASVEQRDNPELRGKPVAVGGSRA-RGVVAAASYEARKYGVHSALASK 59

Query: 61  YALKLCPDLILVPGRMQVYKEVSQQIRAIFCRYTELIEPLSLDEAYLDVSDCKLFKGSAT 120
            A + CP LI V  R +VY  VS+QIR IF  YT+L+EPLSLDEAYLDV++ K+   SA+
Sbjct: 60  IASQRCPHLIFVKARFEVYSAVSRQIREIFHAYTDLVEPLSLDEAYLDVTENKIGMPSAS 119

Query: 121 LIAEAIRRDILAETGLTASAGVAPIKFLAKVASDLNKPNGQCVIPPDEVAEFVKSLSLRK 180
           +IA  IR  IL ETGLTASAGV+  KFLAK+ASD+NKPNG  +I PD     V  L + K
Sbjct: 120 IIANEIRARILEETGLTASAGVSYNKFLAKIASDMNKPNGFTLITPDVAENLVAGLVIEK 179

Query: 181 IPGVGKVTAEKLSSLGLNTCADVQAYPKQELIARFGKFGTVLVERAHGIDERGISVSRER 240
             G+GKVTA K+ ++G+ T AD++   ++EL+  FGK G      A   D+R +   R R
Sbjct: 180 FHGIGKVTAAKMQAMGILTGADLRQRTEEELVRHFGKVGRYYYRIARAQDDREVQPHRIR 239

Query: 241 KSVGVETTLAQDIYTLEQCQQVMPGLIQELS---SRLGRSAKGRQIHKQVVKLKFNDFKQ 297
           KS+G E T   D+         +  L QE++    RL  +AK        +K+K+ DF Q
Sbjct: 240 KSIGSERTFDVDLVEEHDMLLQLDSLCQEVAQDMERLKVTAK-----TVTLKIKYFDFTQ 294

Query: 298 TTIEHR--SDEVSVVMFYELLSQAMARQE--GRGIRLLGVSV 335
            T      S+  S    Y ++   +   +     +RLLGVSV
Sbjct: 295 NTRSKTFLSEFSSADAMYTIVRDLLRTPQLPLYPVRLLGVSV 336