Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella sp. ANA-3

Subject, 351 a.a., DNA polymerase IV from Escherichia coli ECRC98

 Score =  371 bits (952), Expect = e-107
 Identities = 204/355 (57%), Positives = 250/355 (70%), Gaps = 13/355 (3%)

Query: 1   MRKIIHIDMDCYFAAVEMRDFPEYRGKPLAVGGSRVQRGVISTCNYEARKFGVRSAMATG 60
           MRKIIH+DMDC+FAAVEMRD P  R  P+A+GGSR +RGVIST NY ARKFGVRSAM TG
Sbjct: 1   MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60

Query: 61  YALKLCPDLILVPGRMQVYKEVSQQIRAIFCRYTELIEPLSLDEAYLDVSDCKLFKGSAT 120
            ALKLCP L L+PGR   YKE S  IR IF RYT  IEPLSLDEAYLDV+D     GSAT
Sbjct: 61  MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120

Query: 121 LIAEAIRRDILAETGLTASAGVAPIKFLAKVASDLNKPNGQCVIPPDEVAEFVKSLSLRK 180
           LIA+ IR+ I +E  LTASAGVAP+KFLAK+ASD+NKPNGQ VI P EV+ F+++L L K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAK 180

Query: 181 IPGVGKVTAEKLSSLGLNTCADVQAYPKQELIARFGKFGTVLVERAHGIDERGISVSRER 240
           IPGVGKV+A KL ++GL TC DVQ      L+ RFGKFG +L ER+ GIDER ++  R R
Sbjct: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVILLKRFGKFGRILWERSQGIDERDVNSERLR 240

Query: 241 KSVGVETTLAQDIYTLEQCQQVMPGLIQELSSRLGRSAKGRQIHKQVVKLKFNDFKQTTI 300
           KSVGVE T+A+DI+   +C+ ++  L  EL  RL +      I +Q VKLKF+DF+QTT 
Sbjct: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300

Query: 301 EHRSDEVSVVMFYELLSQAM----ARQEGRGIRLLGVSVGLAESKDTLSPLMVRE 351
           EH    ++     +L++ A      R+ GRG+RL+G+ V L      L P M R+
Sbjct: 301 EHVWPRLNKA---DLIATARKTWDERRGGRGVRLVGLHVTL------LDPQMERQ 346