Pairwise Alignments

Query, 667 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  227 bits (578), Expect = 2e-63
 Identities = 161/503 (32%), Positives = 247/503 (49%), Gaps = 27/503 (5%)

Query: 148 WWQEAIDQRGLFVGDPAVDANDGS--ISATVKTPVYGANGELIGIGGMDILIDTIGKTLL 205
           W+    D R + + DP  D   G   +  T+  P+   +G +IG+ G+DI ++T+     
Sbjct: 190 WYTCPRDTRKVCLLDPYADEVAGKQMLMTTISLPLM-VDGNVIGVVGIDIALNTLQAVTD 248

Query: 206 APIKYRNYGQAFL--MTDEGKLVYFPGFSDKFPPGSLANQIDSQFKDTSGFTALRQQMQR 263
           A  K    G A L  ++  G +    G   +    +L + + ++ K+     A    M R
Sbjct: 249 AAQKELFNGAAHLDILSSTGLIAASSG-QPEIVGKTLMDTVGAEGKEIVQLLASDSPMIR 307

Query: 264 EAQGFAEVTFNGVPQRVTFVSVGGDYPKQKWHLAFMLPHEVIEAPVTE-----------A 312
           E        +   P              + W +   LP  V+ A   +            
Sbjct: 308 EQDHTIRAVYPVKPIA----------DAKSWGVVVTLPRNVMLADTLKLQDVLDKAQAAG 357

Query: 313 FWNACFVALGIMLLVGITVWLMLLPFRRQLSKLLDAMEDIAEGDSDLSQRILMEREDELG 372
              A  V     LL  + +WL      R ++ +   ++DIA GD DL+QR+   ++DELG
Sbjct: 358 TLKALLVGAAAALLGLLLIWLTATGVTRPINNVAAMLKDIASGDGDLTQRLAYAKKDELG 417

Query: 373 KLGDAFNRFAEKVQQMLLHTRNLTQEVGTGVMDARQVCDLAVSSVSSQKQQIDSVATAAT 432
           +L + FNRF +K+Q  +   +    E       +  +       +  Q ++ID VATA+ 
Sbjct: 418 ELANWFNRFLDKLQPTIAQIKQSITEARGTADQSSAIARQTSEGMQVQFREIDQVATASN 477

Query: 433 QMAQTSQEMAISAQRANDFAEKAQTQAHDGTQIVSRATEGMKALSVQVIEAAKVIKELRS 492
           +M+ T+ ++A SA  A   A  A   A +G  I+ ++T  + +L+ +V +A   ++ L  
Sbjct: 478 EMSATAHDVANSASNAASAARGADQSAREGMSIIEQSTRDITSLAEEVSKAVGEVEALAV 537

Query: 493 SSEQIGEVLSVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQDSTAN 552
           +SEQIG VL VIR+IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQDS   
Sbjct: 538 NSEQIGSVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRNLAKRTQDSVEE 597

Query: 553 IQGIIQTLQQSALQAEQVMESGVEQARVGQDLTTQVEQALSDIASAIVSIQQQTVEITVA 612
           I+ +I+ +Q         M S   QA+       Q  QAL  I+ A+  I    ++I  A
Sbjct: 598 IRLVIERIQSGTRGVVATMHSSQSQAQSNAGQIHQAAQALGKISDAVTVISDMNLQIASA 657

Query: 613 IGQQAVVAEEVAQNVVSVRGLSD 635
             QQ+ VAEEV +NV ++R +++
Sbjct: 658 AEQQSAVAEEVNRNVSAIRTVTE 680



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 8/126 (6%)

Query: 458 QAHDGTQIVSRATEGMKALSVQVIEAAKVIKELRSSSEQIGEVLSVIRNIADQTNLLALN 517
           + +   Q++S ++  M   SVQ +  +K  ++     +  GE L V+  +ADQ   L   
Sbjct: 33  ETNQNDQLISDSSSRMLTSSVQSLLQSKAGEQAVLLQKTFGENLLVVTALADQVKDL--- 89

Query: 518 AAIEAARAGEQGRGFAVVADEVRTLASRTQDSTANIQGIIQTLQQSALQAEQVMESGVEQ 577
            A+ A RA E G     + +E+      T +  + + GI  + + + L  +   E   ++
Sbjct: 90  RALAAKRALEPG----ALREELNQSLKTTFERNSKVLGIWLSFEPNGLDGKD-SEFVDDK 144

Query: 578 ARVGQD 583
           ARV  +
Sbjct: 145 ARVSNE 150