Pairwise Alignments

Query, 667 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

Subject, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  241 bits (615), Expect = 7e-68
 Identities = 158/542 (29%), Positives = 277/542 (51%), Gaps = 25/542 (4%)

Query: 132 NGRFDGDPN------YYTNKRPWWQEAIDQRGLFVGDPAVDANDGSISATVKTPVYGANG 185
           NG F   P+      Y   +RPW+++A+      +  P + A  G I  T+  PV   NG
Sbjct: 104 NGVFTQRPDAKMPDGYDPRQRPWYKQAVAADKPMLTPPYMAAVGGQI-VTIAMPVK-KNG 161

Query: 186 ELIGIGGMDILIDTIGKTLLAPIKYRNYGQAFLMTDEGKLVYFPGFSDKFPPGSLANQID 245
           EL+G+ G D+ + T+ K ++  + +   G AFL++ +G+++  P            +Q+ 
Sbjct: 162 ELLGVVGGDLSLQTLVK-IINSVDFGGIGHAFLVSSDGQVIVSPE----------QDQVM 210

Query: 246 SQFKDTSGFTALRQQMQREAQGFAEVTFNGVPQRVTFVSVGGDYPKQKWHLAFMLPHEVI 305
              KD    T +R  +++ +Q   +V  NG  + ++F  + G  P   W++   +  +  
Sbjct: 211 KNLKDIYPGTQVR--IEKVSQ---DVVLNGQDRILSFTPISG-LPGADWYIGLSIDKDKA 264

Query: 306 EAPVTEAFWNACFVALGIMLLVGITVWLMLLPFRRQLSKLLDAMEDIAEGDSDLSQRILM 365
            AP+ +   +A    L  ++ + + + L++    R L+ +  AM+DIA+G+ DL++R+++
Sbjct: 265 YAPLGKFRTSALIAMLIAVVAIAVLLSLLIQVLLRPLTTMGVAMQDIAQGEGDLTRRLVV 324

Query: 366 EREDELGKLGDAFNRFAEKVQQMLLHTRNLTQEVGTGVMDARQVCDLAVSSVSSQKQQID 425
             +DE G++G AFN+F E++   +    + T++V           + ++     Q  + +
Sbjct: 325 TSKDEFGEVGSAFNQFVERIHASISEVSSATRQVHDLSQRVMASSNASIIGSDEQSARTN 384

Query: 426 SVATAATQMAQTSQEMAISAQRANDFAEKAQTQAHDGTQIVSRATEGMKALSVQVIEAAK 485
           SVA A  ++   +QE+A +A  A+  A  A  QA DG ++V +    M  LS ++  +  
Sbjct: 385 SVAAAINELGAATQEIARNAADASQHASGASEQADDGRKVVEQTILAMSELSQKISLSCT 444

Query: 486 VIKELRSSSEQIGEVLSVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASR 545
            I+ L +S++ IG +L VI+ I+ QTNLLALNAAIEAARAGE GRGFAVVADEVR LA R
Sbjct: 445 QIETLNASTDNIGHILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHR 504

Query: 546 TQDSTANIQGIIQTLQQSALQAEQVMESGVEQARVGQDLTTQVEQALSDIASAIVSIQQQ 605
           TQ+S   I  +I +LQ  + +A   M +    +    ++  Q  + L  +   IV I   
Sbjct: 505 TQESAEEIHKMITSLQVGSREAVTTMNASQTSSEESVEVANQAGERLVSVTQRIVEIDGM 564

Query: 606 TVEITVAIGQQAVVAEEVAQNVVSVRGLSDQSLLSSQDLSQSLQGFEQATHELTRNIGQF 665
              +  A  +Q  V E +  ++  +  L+ Q + +  +  +      Q  + L + +  F
Sbjct: 565 NQSVAAATEEQTAVVETLNVDINQINLLNQQGVANLNETLKDCDALSQQANRLKQLVDSF 624

Query: 666 KI 667
           KI
Sbjct: 625 KI 626