Pairwise Alignments

Query, 809 a.a., RNAse R (RefSeq) from Shewanella sp. ANA-3

Subject, 722 a.a., 3'-to-5' exoribonuclease RNase R from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  613 bits (1582), Expect = e-180
 Identities = 337/717 (47%), Positives = 452/717 (63%), Gaps = 39/717 (5%)

Query: 120 HGDKVLAQKAGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIA 179
           H D+V A+   +DRKGR E R+  +++   + I+GR   +SG+  V  +DKR  Q++LI 
Sbjct: 3   HKDRVKARIVRLDRKGRPEGRVTEIVERSDSPIIGRLLQESGVWLVAPEDKRYGQDVLIP 62

Query: 180 TEDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSA 239
                 A+ G VVVV+LT  P  + +  G+V EVLG+   PGMEIEIA+R Y +PH +S 
Sbjct: 63  KGATGSAKPGQVVVVQLTEPPALYGQPVGRVKEVLGEIDDPGMEIEIAVRKYGVPHEFSD 122

Query: 240 VIEKKLRRIPDEVTEADKVGRVDLRDLPLVTIDGEDARDFDDAVYAEVKPSG---GWRLW 296
               + R +PD V  AD   RVDLRD+PLVTIDGEDARDFDDAVY E    G   GWRL 
Sbjct: 123 AALAQARALPDHVRAADHKHRVDLRDVPLVTIDGEDARDFDDAVYCEPAKVGKGKGWRLL 182

Query: 297 VAIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAE 356
           VAIADVS+YV T S +D +A  R  SVYFP +VIPMLPEK+SNGLCSLNP V+RLCMV +
Sbjct: 183 VAIADVSHYVETGSPIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPGVERLCMVCD 242

Query: 357 MTISARGKLSGYKFYPAVMHSHARFTYTQVAAMLEG--GPIAPEHEALFPHLQCLQSLYL 414
           M ++A+G++  Y+FYPAVM SHARFTYT+VAA+L+   GP A + +AL P+L  L  +Y 
Sbjct: 243 MLVNAKGEVHAYQFYPAVMFSHARFTYTEVAAILQNTRGPEAAQRKALVPYLLNLHDVYR 302

Query: 415 ALDEQRAERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVK 474
           AL   R ERGA+ FET ETQ + ++  +I+KIVPR RN AHK+IEE M+ ANV +A F++
Sbjct: 303 ALLAARGERGAVDFETTETQIVCDESGRIEKIVPRTRNDAHKLIEEAMLAANVCSADFIQ 362

Query: 475 KHKGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELI 534
           + K   L+RVHE P+ +K    + +L   G+S   G  P P D+Q +     DRP+A+ I
Sbjct: 363 QGKHTGLFRVHEGPTPEKQEILRNYLKAMGVSQTIGDNPKPGDFQAIANATKDRPEAQQI 422

Query: 535 QVMLLRSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEK----- 589
             MLLRSM+QAIYTP N GHFGLA E Y HFTSPIRRYPDL++HRVI+ +LA+++     
Sbjct: 423 HTMLLRSMQQAIYTPVNSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAILARKRYELPN 482

Query: 590 ----GEANEKWTSD---------GGYHYQLDELDLL-----GEECSNTERRADEATRDVS 631
               GEA+ K +            G   +    D L     G  CS  ERRADEA+RDV 
Sbjct: 483 LPTPGEAHAKLSKRLASRVRPPVAGEPVKKPSADTLAWQAAGLHCSANERRADEASRDVE 542

Query: 632 DWLKCEFMQDHVGDTFEAVIASVTNFGLFVRLNDLFIDGLVHISSLGSDYYQFDPMRQRL 691
            WLKC++M++H+G+ F  V+ +VT+FGLFV L+ ++++GLVHI+ LG +Y++FD  RQ L
Sbjct: 543 AWLKCKYMREHLGEEFSGVVTAVTSFGLFVTLDAMYVEGLVHITELGGEYFRFDEARQEL 602

Query: 692 IGEHTGQIYQVGDPVTVKVAAVNLDDRQIDLVMLGDS---------GKGGRRKSAPSREK 742
            GE TG  Y +G  V V+V+ V+LD R+ID  ++ D+          K G   ++ ++  
Sbjct: 603 RGERTGIRYALGTRVKVQVSRVDLDGRRIDFRLVSDNDDLVLRAMRDKTGMSPASDNQAP 662

Query: 743 PMTA--RERVNREGAKMAKAAKSTGAKSKAGSDKAGASKSKSKAGAKPKKSVKNSAK 797
           P  A    R   EGA   + A+    + KA   KA   K K   G   + +   S K
Sbjct: 663 PARAGKARRSRSEGAPQGRHAQVPPMEVKAAVRKAAGKKDKGARGGGARGTASPSRK 719