Pairwise Alignments

Query, 809 a.a., RNAse R (RefSeq) from Shewanella sp. ANA-3

Subject, 818 a.a., ribonuclease R from Pectobacterium carotovorum WPP14

 Score =  919 bits (2375), Expect = 0.0
 Identities = 465/822 (56%), Positives = 603/822 (73%), Gaps = 25/822 (3%)

Query: 1   MIKDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAVALQIHDEEQLEALRRRLR 60
           M +DP  ERE +KYE+PIPSREYI+ ++  + +PI+R+ +A  LQ+  EE LEALRRRLR
Sbjct: 1   MSQDPFLEREAEKYESPIPSREYILAHIAKRDTPISREELAADLQLTGEEALEALRRRLR 60

Query: 61  AMERDGELVFTRGQSYGLPEKMDLISGTVLGHREGYGFFKPDEGGDDLFISNRDMLMYFH 120
           AMERDG+L+FTR Q Y LPEK+DL+ GTV+GHR+G+GF + +   DDL++S  +M    H
Sbjct: 61  AMERDGQLIFTRRQCYALPEKLDLLRGTVIGHRDGFGFLRVEGRKDDLYLSAEEMKRTIH 120

Query: 121 GDKVLAQKAGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIAT 180
           GD  LAQ  G DRKGRRE RIVR+++PR+  IVGR+ VD+G+ FV+ DD R++ +ILI  
Sbjct: 121 GDVALAQPLGADRKGRREGRIVRVLEPRTGQIVGRYFVDAGVGFVVPDDSRLSFDILIPK 180

Query: 181 EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAV 240
           E+ NGAR G VVVVELT+R  R  KA GK+ E+LG  M  G+ ++IALR +D+PHTW   
Sbjct: 181 EEINGARMGFVVVVELTQRATRRTKAVGKIVEILGDNMGTGLAVDIALRTHDIPHTWPPK 240

Query: 241 IEKKLRRIPDEVTEADKVGRVDLRDLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIA 300
           +E++++ + +EV EA K GRVDLR LPLVTIDGEDARDFDDAV+ E K  GGWRLWVAIA
Sbjct: 241 VEEQVKDLSEEVPEAAKKGRVDLRKLPLVTIDGEDARDFDDAVHCEPKRGGGWRLWVAIA 300

Query: 301 DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTIS 360
           DVSYYVR ++ LD EARARG SVYFPSQV+PMLPE +SNGLCSLNP VDRLCMV EMT+S
Sbjct: 301 DVSYYVRPNTPLDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360

Query: 361 ARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAPEH-EALFPHLQCLQSLYLALDEQ 419
           A+GKLS YKFY AVM SHAR TYT+V  +L+G     EH + L   L+ L  +Y AL+  
Sbjct: 361 AQGKLSSYKFYEAVMSSHARLTYTKVWHILQGDAELREHYKPLVGGLEELHRMYKALEHA 420

Query: 420 RAERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGE 479
           R  RG IAFET E +FIFN +R+I+++    RN AHK+IEECMILAN+SAAKFV+K++  
Sbjct: 421 REVRGGIAFETEEAKFIFNAERRIERVEAVVRNDAHKLIEECMILANISAAKFVEKNEEP 480

Query: 480 ILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLL 539
            L+RVH+ PSE  +   +  L E GL++ GG++P P DY  +M ++ADRPD E++Q MLL
Sbjct: 481 ALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMNELADRPDREMLQTMLL 540

Query: 540 RSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWTSD 599
           RSM+QAIY P+N GHFGLAL  Y HFTSPIRRYPDL LHR I+YLL+    + +E+WTS 
Sbjct: 541 RSMKQAIYDPENRGHFGLALTSYGHFTSPIRRYPDLSLHRAIKYLLS----DRHERWTST 596

Query: 600 GGYHYQLDELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGL 659
           GG+H  ++E+  LG  CS TERRADEATRDV+DWLKC+FMQDHVG+ F  +IASVT FG 
Sbjct: 597 GGWHSDINEMLQLGMHCSMTERRADEATRDVADWLKCDFMQDHVGEVFTGIIASVTGFGF 656

Query: 660 FVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQIYQVGDPVTVKVAAVNLDDRQ 719
           FVRL DLFIDGLVH+S+L +DYY++D + QRLIGE  GQ+Y++GD V ++V AV++D+R 
Sbjct: 657 FVRLKDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESRGQVYRLGDEVEIRVEAVHMDERN 716

Query: 720 IDLVMLGDSGKGGRRKSAPSREKPMTARERVNREGAKMAKAAKSTGAKSKAGSD------ 773
           ID  ++  + K         R +  TAR+RV +  ++ AK A+   + SKA ++      
Sbjct: 717 IDFALISSTRK--------VRGEGKTARDRVKKPDSREAKPARRRRSASKAPANFEPDAA 768

Query: 774 --KAGASKSKS-KAGAKPKKS---VKNSAKKPKAAKRSTRKK 809
             K G S +KS K+ AKPKK+    K +A+K +    +T+ K
Sbjct: 769 FRKEGDSSAKSDKSKAKPKKNRDKAKKNAEKTRKIAAATKAK 810