Pairwise Alignments

Query, 809 a.a., RNAse R (RefSeq) from Shewanella sp. ANA-3

Subject, 742 a.a., ribonuclease R from Magnetospirillum magneticum AMB-1

 Score =  395 bits (1014), Expect = e-114
 Identities = 266/750 (35%), Positives = 393/750 (52%), Gaps = 58/750 (7%)

Query: 17  PIPSREYIIEYLRSQKSPITRDSIAVALQIHDEEQLEALRRRLRAMERDGELVFTRGQS- 75
           PIPS++ I++++RSQ   + +  +A A  +   ++++ L+  L+ +ER+G  V  RGQ  
Sbjct: 8   PIPSKQEILDFIRSQPGRVGKRELARAFNLRGSDKID-LKAILKELEREG--VVERGQKR 64

Query: 76  ----------YGLPEKMDLISGTVLGHR----EGYG-----FFKPDEGGDDLFISNRDML 116
                      G+ E +   S   L  R    EG G     F  P   G+          
Sbjct: 65  RFASPGTLPDVGVVEIIGTDSDGELLARPLNYEGEGRPPRIFMAPFRAGE---------A 115

Query: 117 MYFHGDKVLAQKAGMDRKGRREARIVRLIQPRSAAIVGRFHVD-SGMAFVIADDKRITQE 175
               GD+VLA+   +  +   EAR +R+I    A ++G F  +  G   +    ++   E
Sbjct: 116 AVGVGDRVLAKLKRVRGEDVYEARAIRIIGEARARVLGVFEPNPDGSGRLRPTSRKEKAE 175

Query: 176 ILIATEDRNGARQGDVVVVELTRRPGR-FVKAAGKVTEVLGKQMAPGMEIEIALRNYDLP 234
            ++   +   A+ G++V+ ++   PGR +      V E +G   AP     +A+   D+P
Sbjct: 176 YMVPRGETGDAKAGELVLADIM--PGRLYGMRTASVKERMGLLGAPRSVSLVAIHTNDVP 233

Query: 235 HTW-SAVIEKKLRRIPDEVTEADKVGRVDLRDLPLVTIDGEDARDFDDAVYAEVKPS--- 290
             +  A +++     P  + E     R DLR +PLVTIDGEDARDFDDAV+AE  P    
Sbjct: 234 FEFPEAALQQAAAEGPAPMNE-----RTDLRSIPLVTIDGEDARDFDDAVFAEPDPDPKN 288

Query: 291 -GGWRLWVAIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVD 349
            GGW   VAIADVS+YVR   +LD EA  RGNSVYFP +V+PMLPE++SNG CSL P  D
Sbjct: 289 PGGWHCMVAIADVSWYVRPGDSLDKEAFKRGNSVYFPDRVVPMLPEELSNGWCSLKPDED 348

Query: 350 RLCMVAEMTISARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAPEHEALFPHLQCL 409
           R CM     + A G    ++F   +M S AR TYTQV A  +G P       L P ++ L
Sbjct: 349 RPCMAVHFWLDALGNKLHHRFVRGMMRSVARLTYTQVQAAKDGTPDDRTGPLLAPVIEPL 408

Query: 410 QSLYLALDEQRAERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSA 469
              + AL  +R ERG +  +  E +     + K++ I  R R  +H++IE+ MI+ANV A
Sbjct: 409 YGAWAALFRERKERGVLELDIPERKVTITPEGKVEAITERERFDSHRLIEDFMIMANVCA 468

Query: 470 AKFVKKHKGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRP 529
           A+ ++K     +YR+H+ PS++KL   +EFL+   L +  G    PA +  ++  +    
Sbjct: 469 AETLEKVHKPCMYRIHDLPSQEKLDGLREFLSSMDLKLAKGQVLRPAHFNRILEAVEGTA 528

Query: 530 DAELIQVMLLRSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEK 589
           ++ L+  ++LRS  QA Y+P+N GHFGL L  YAHFTSPIRRY DL++HR +  +     
Sbjct: 529 NSHLVSEVILRSQAQAQYSPENIGHFGLGLARYAHFTSPIRRYADLLVHRAL--ISGLHL 586

Query: 590 GEANEKWTSDGGYHYQ-LDELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDTFE 648
           GE        GG     + E    GE  S TERRA  A R+  D     F+ D VG TF 
Sbjct: 587 GE--------GGLPADAVAEFAEWGEHISVTERRAATAEREAVDRYVTAFLADKVGATFA 638

Query: 649 AVIASVTNFGLFVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQIYQVGDPVTV 708
             ++ VT FGLFV L+    DGLV IS+L  D+Y  D +   L+G+ T + +Q+G  + V
Sbjct: 639 GKVSGVTRFGLFVTLDQTGADGLVPISTLPEDFYVHDEVHHCLVGKRTRKTFQLGQKLDV 698

Query: 709 KVAAVNLDDRQIDLVMLGDSGKGGRRKSAP 738
           ++A  N     + +  LG +G+ G R   P
Sbjct: 699 ELAEANTLTGSM-VFRLGGAGERGLRPPRP 727