Pairwise Alignments

Query, 809 a.a., RNAse R (RefSeq) from Shewanella sp. ANA-3

Subject, 812 a.a., '3'-to-5' exoribonuclease RNase R' transl_table=11 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  927 bits (2397), Expect = 0.0
 Identities = 474/818 (57%), Positives = 600/818 (73%), Gaps = 18/818 (2%)

Query: 1   MIKDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAVALQIHDEEQLEALRRRLR 60
           M +DP  ERE +KY NPIPSRE+I+E+L  ++ P +R+ +AV L I  EEQLEALRRRLR
Sbjct: 1   MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASREELAVELNIEGEEQLEALRRRLR 60

Query: 61  AMERDGELVFTRGQSYGLPEKMDLISGTVLGHREGYGFFKPDEGGDDLFISNRDMLMYFH 120
           AMERDG+LVFTR Q Y LPE++DL+ GTV+GHR+GYGF + +   DDL++S+  M    H
Sbjct: 61  AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120

Query: 121 GDKVLAQKAGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIAT 180
           GD+VLAQ  G DRKGRREARIVR++ P+++ IVGR+  D+G+ FV+ DD R++ +ILI  
Sbjct: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP 180

Query: 181 EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAV 240
           ED  GAR G VVVVELT+RP R  KA GK+ EVLG  M  GM +++ALR +++P+ W   
Sbjct: 181 EDVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPQA 240

Query: 241 IEKKLRRIPDEVTEADKVGRVDLRDLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIA 300
           +E+++  + +EV E  KVGRVDLRDLPLVTIDGEDARDFDDAVY E K  GGWRLWVAIA
Sbjct: 241 VEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300

Query: 301 DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTIS 360
           DVSYYVR  + LD EAR RG SVYFPSQV+PMLPE +SNGLCSLNP VDRLCMV EMTIS
Sbjct: 301 DVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS 360

Query: 361 ARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGG-PIAPEHEALFPHLQCLQSLYLALDEQ 419
           A+G+L+GYKFY AVM SHAR TYT+V  ML+G   +  ++  L  H++ L +LY  LD+ 
Sbjct: 361 AKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDKA 420

Query: 420 RAERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGE 479
           R ERG I+FE+ E +FIFN +R+I++I    RN AHK+IEECMI+AN+SAA+FV+K K  
Sbjct: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEP 480

Query: 480 ILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLL 539
            L+R+H+ P+ + + +F+  LAE GL + GG +P P DY  ++  IADRPDAE++Q MLL
Sbjct: 481 ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL 540

Query: 540 RSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWTSD 599
           RSM+QAIY P+N GHFGLAL+ YAHFTSPIRRYPDL LHR I+YLLAKE+G      T  
Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGNKGNT-TET 599

Query: 600 GGYHYQLDELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGL 659
           GGYHY ++E+  LG+ CS  ERRADEATRDVSDWLKC+FM D VG+ F+ VIASVT FG 
Sbjct: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGF 659

Query: 660 FVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQIYQVGDPVTVKVAAVNLDDRQ 719
           FVRL++LFIDGLVH+SSL +DYY+FD + QRLIGE  GQ Y++GD V V+V AVN+D+R+
Sbjct: 660 FVRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERK 719

Query: 720 IDLVMLGDSGKGGRRKSAPSREKPMTARERVNREGAKMAKAAKSTGAKSKAGSDKA--GA 777
           ID  ++         + AP R    TARE+  +  +K A   +  G K     D A  G 
Sbjct: 720 IDFSLISS-------ERAP-RNVGKTAREKAKKGESKNAGKRRQVGKKVNFEPDSAFRGE 771

Query: 778 SKSKSKAGAK-PKKSVKNSAKKPK-----AAKRSTRKK 809
            K+K KA  K  +K+ K SAK  K      AKR+ +KK
Sbjct: 772 KKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKK 809