Pairwise Alignments

Query, 809 a.a., RNAse R (RefSeq) from Shewanella sp. ANA-3

Subject, 804 a.a., ribonuclease R from Kangiella aquimarina DSM 16071

 Score =  795 bits (2052), Expect = 0.0
 Identities = 413/811 (50%), Positives = 547/811 (67%), Gaps = 17/811 (2%)

Query: 3   KDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAVALQIHDEEQLEALRRRLRAM 62
           +DP  E E  +Y+NPI SR++I+  L     P++ D +A  L++ + EQ+EAL++RL AM
Sbjct: 7   QDPQAELEAQRYQNPIASRQFILRQLEEANEPVSLDQLAKRLEMKEPEQVEALQKRLNAM 66

Query: 63  ERDGELVFTRGQSYGLPEKMDLISGTVLGHREGYGFFKPDEGGDDLFISNRDMLMYFHGD 122
           ERDG+L+  R   Y L +  DL+ G VL HR+GYG+   ++GGDD ++S R+M   FHGD
Sbjct: 67  ERDGQLICNRKGRYCLVDATDLVRGKVLAHRDGYGYLALEKGGDDWYLSPREMQTVFHGD 126

Query: 123 KVLAQKAGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIATED 182
           KVLA+   +DR+GR E  IV ++   ++ IVGR H ++GM FV ++D RI  +++IA +D
Sbjct: 127 KVLARVRNVDRRGRTEGAIVEILDGSTSHIVGRLHEENGMKFVTSEDPRILHDLIIAPDD 186

Query: 183 RNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAVIE 242
              A  G VVV ++ +RP R   A G +TEVLG  ++ GMEIEIA+RN+ +PH W   + 
Sbjct: 187 CMNAEIGQVVVAQIVQRPKRNQHARGIITEVLGDYLSAGMEIEIAIRNHQIPHEWPDDVL 246

Query: 243 KKLRRIPDEVTEADKVGRVDLRDLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIADV 302
            ++  +P +V+E D  GRVDLR LPLVTIDGEDARDFDDAVY   K  GGW LWVAIADV
Sbjct: 247 SEVGELPVDVSEKDWQGRVDLRQLPLVTIDGEDARDFDDAVYCRRKAKGGWTLWVAIADV 306

Query: 303 SYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTISAR 362
           S+YVR  SALD EA  RGNSVYFP  V+PMLPE +SNGLCSL P VDRLCMVAEM+++A 
Sbjct: 307 SHYVRPGSALDQEALERGNSVYFPEFVVPMLPELLSNGLCSLKPKVDRLCMVAEMSLTAT 366

Query: 363 GKLSGYKFYPAVMHSHARFTYTQVAAMLEGG-PIAPEHEALFPHLQCLQSLYLALDEQRA 421
           G+++  KFYPAVMHSHARFTY +V  +L G   +  E+  L   L+ L  L+ A  + + 
Sbjct: 367 GQVTASKFYPAVMHSHARFTYDKVWGILSGDEALQKEYAPLVGDLKELHELFKARLKLKE 426

Query: 422 ERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGEIL 481
            RGAI FET ETQ IF++ +KI+KIV R RN AHKIIEECMI ANV+AA+F++K++   +
Sbjct: 427 ARGAIEFETTETQIIFDENKKIEKIVGRVRNDAHKIIEECMICANVAAAEFIEKYEKPGV 486

Query: 482 YRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLLRS 541
           YRVHE PSE++L  F+ FL E G+ + GG  P P  Y+ +   IA+RPD ELIQ M+LRS
Sbjct: 487 YRVHEGPSEERLEKFRAFLGELGIFLFGGSTPEPRHYRELHDAIAERPDQELIQTMMLRS 546

Query: 542 MRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWTSDGG 601
           M QA+Y+PDN+GHFGLA + Y HFTSPIRRYPDL++HR+I+ +LA+E   A     +DGG
Sbjct: 547 MMQAVYSPDNQGHFGLAFDSYTHFTSPIRRYPDLLVHRIIKSILAREFDMAG----TDGG 602

Query: 602 YHYQLDELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGLFV 661
             Y+  EL    E  S TERRAD ATRDV DWLKCE+M   VG+ +   I+SVT+FG+FV
Sbjct: 603 LGYEEKELVTFTEHSSMTERRADLATRDVVDWLKCEYMLTRVGEEYWGTISSVTSFGIFV 662

Query: 662 RLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQIYQVGDPVTVKVAAVNLDDRQID 721
            L++LF++GL+HIS LG DYY FD ++ RLIGEH  Q Y+VGD V +KVA V+++ R ID
Sbjct: 663 ALDELFVEGLIHISELGDDYYHFDALKMRLIGEHKRQSYRVGDRVKIKVANVDMEQRNID 722

Query: 722 LVMLGDSGKGGRRKSAPSREKPMTARERVNREGAKMAKAAKSTGAKSKAGSDKAGASKSK 781
             ++         +    RE+P     +     AK + +    G K K G  +    K  
Sbjct: 723 FALI--------EREYVKREEPKGQERKKLYAKAKKSGSLSGDGKKGKDGKKRRDYRKGA 774

Query: 782 SKAGAKPKK-SVKNSAK--KPKAAKRSTRKK 809
           SK GAKP+  S K  AK  KPK  K   +K+
Sbjct: 775 SK-GAKPESGSAKKGAKNTKPKRGKNGKKKR 804