Pairwise Alignments

Query, 809 a.a., RNAse R (RefSeq) from Shewanella sp. ANA-3

Subject, 784 a.a., exoribonuclease from Agrobacterium fabrum C58

 Score =  381 bits (979), Expect = e-110
 Identities = 267/761 (35%), Positives = 386/761 (50%), Gaps = 44/761 (5%)

Query: 18  IPSREYIIEYLRSQKSPITRDSIAVALQIHDEEQLEALRRRLRAMERDGELVFTRG---Q 74
           +PSRE +++++       ++  IA A  +  E ++  L+  L+ +E DG +  +R    +
Sbjct: 36  VPSREVLLKFIADHPQQASKREIAKAFGLKGENRI-VLKALLKELEVDGMVHKSRKSLTR 94

Query: 75  SYGLPEKMDLISGTVLGHREGYGFFKPDEGGDDLFISNRDMLMYFH------------GD 122
             GLP    L   T    ++G    +P E  +D+  +   ++                GD
Sbjct: 95  PGGLPPVTVLDITT--RDKDGELIGRPAEWPEDMGAAPAVLIRQSSQDRGKKAPAAGLGD 152

Query: 123 KVLAQK-AGMDRKGRR-EARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIAT 180
           ++LA+     D  G    AR+V+LI  R  A++G F    G    +    R  +E++I  
Sbjct: 153 RILAKIFPSKDTVGPAYTARVVKLIDRRQNALLGVFKQTEGGGGRLMPIDRRGEEMVIDP 212

Query: 181 EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAV 240
           +    A+ GD++ VE +R  GR+     KV  V+G   +      IA+  + +PH    +
Sbjct: 213 DGVGDAKDGDLIEVETSRNSGRYGLTRAKVLSVVGSVASEKAISMIAIYAHGIPH----I 268

Query: 241 IEKKLRRIPDEVTEADKVGRVDLRDLPLVTIDGEDARDFDDAVYAEVKPS----GGWRLW 296
               +    D    A    R D RDLPL+TID  DA+D DDAVYAE+ PS     G  + 
Sbjct: 269 FPPNVLAEADAAKAATMSHREDWRDLPLITIDPADAKDHDDAVYAELDPSPDNPDGVIVT 328

Query: 297 VAIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAE 356
           VAIADVS+YVR  + LD EA  RGNSVYFP +V+PMLPE+ISN LCSL   VDR  +   
Sbjct: 329 VAIADVSWYVRPGAPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALAVR 388

Query: 357 MTISARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAPEHEALFPHLQCLQSLYLAL 416
           MT S  G+ + + F+  +M S A+ +Y Q  A ++G P       L P L+ L   Y  +
Sbjct: 389 MTFSKEGRKASHTFHRIMMKSAAKLSYQQAQAAIDGNPDDKTGTLLEPILKPLWHAYEVM 448

Query: 417 DEQRAERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKH 476
              R  R  +  +  E +        +DK+V   R  AHK+IEE MI ANV+AA+ ++  
Sbjct: 449 KRGRDRRQPLELDMPERKIQLRPDGTVDKVVIPERLDAHKLIEEMMIQANVAAAETLETK 508

Query: 477 KGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQV 536
           K  ++YRVH++P+  K    +EFL   G+SM  G+      +  ++ +  D P   ++  
Sbjct: 509 KQRLVYRVHDAPTLSKQEVLREFLGTIGISMAKGVAMRANSFNGILARALDTPHQIMVNE 568

Query: 537 MLLRSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKW 596
           M+LRS  QAIY+P+N GHFGL L +YAHFTSPIRRY DL++HR +               
Sbjct: 569 MVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRAL----------VGSLG 618

Query: 597 TSDGGYHYQLD-ELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVT 655
             +GG   Q +  LD +  E S  ERRA  A RD  + L    + + VG+ FE  +  VT
Sbjct: 619 LGEGGITPQEEATLDDIAAEISTFERRAMAAERDTVNRLIAHHLSERVGEEFEGRVGGVT 678

Query: 656 NFGLFVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQIYQVGDPVTVKVAAVNL 715
             GLFV L     DG V IS+LG+DY+ +D   Q L GE TG  YQ+GD V V++A    
Sbjct: 679 KAGLFVALPQFGADGFVPISTLGTDYFFYDEAHQALTGEKTGLGYQLGDTVQVRLAEAVP 738

Query: 716 DDRQIDLVMLGDSGKGGRRKSAPSREKPMTARERVNREGAK 756
               +   ML      GR+    SR      R R +R GAK
Sbjct: 739 LAGALRFEMLSP----GRKMPVGSRSFHKAGR-RTSRPGAK 774