Pairwise Alignments

Query, 432 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

Subject, 658 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  113 bits (283), Expect = 2e-29
 Identities = 68/173 (39%), Positives = 97/173 (56%)

Query: 243 KVIKFASDITQRIIKSHAIRDAANIAHATSQSTVEQANRGVQLLDATVNTSNAIAAQTHK 302
           ++   A  + +    S  I D        +Q   +Q   G   +    ++   IAA  + 
Sbjct: 415 EITSMAGAVEEFSATSLNIADNMGSTERLAQENAQQTRIGRNSMQEASSSLEHIAAALNS 474

Query: 303 TTESMLKLNEQSQSIQAIVATISAIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQL 362
           T   +  L ++SQ I  IV  I++IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR L
Sbjct: 475 TATVINTLGQRSQEIGGIVGVITSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNL 534

Query: 363 AARTSKSTGEIAAVVDKNSQLTASATSMMNEVERIAEEGKQQLAEVTAVMGDI 415
           A+RT ++T EI+ ++    Q T +A S M     + +EG  + A+V + +  I
Sbjct: 535 ASRTREATDEISGMIQSIQQETGNAISTMERGNVLMQEGLSRNADVASALARI 587



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 50/239 (20%), Positives = 92/239 (38%), Gaps = 45/239 (18%)

Query: 231 YNPVMDDHGKVVKVIKFASDITQ------RIIKSHAIRDAANIAHATSQSTVEQANRGVQ 284
           Y+PV D  G+V+ V+    D T         +K   I    ++A    Q        GVQ
Sbjct: 188 YSPVRDSSGQVIAVLFIGFDYTDAQNAQFENLKRFRIGQTGSLALLDEQKRWLVPPAGVQ 247

Query: 285 LLDATVNTSNAIAAQTHKTTESMLKLNEQSQSIQ--------AIVATISAIADQT----- 331
            LD  V     + A+T          NE+  S+         A+VA++     ++     
Sbjct: 248 ALDQAVPVMLDL-AKTPGKGRFWADKNEEFYSVSVPFDGGPWAVVASMPKAEIRSVTWDV 306

Query: 332 -----------NLLALNAAIEAARAGEQGRGFAVVADEVRQ--------LAARTSKST-G 371
                       LLA+ A +   R+       A + D VRQ        L+ R + S+  
Sbjct: 307 GIRLVIGSVLAMLLAVGATVWLLRS-----KLAPLGDLVRQAEALGAGDLSVRLNVSSHD 361

Query: 372 EIAAVVDKNSQLTASATSMMNEVERIAEEGKQQLAEVTAVMGDIRTGAENVAETVSQLS 430
           EI  +    +Q+  + ++M++ + + AEE   +   ++ + G    G E  +  ++ ++
Sbjct: 362 EIGQLARSFNQMGEALSTMVSHIRKAAEEVNSRAQALSGLSGGAYEGMEQQSGEITSMA 420



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 14/117 (11%)

Query: 311 NEQSQSIQAIVATISAIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAARTSKST 370
           N+  +++  +V+ I   A++ N  A       A +G  G  +  +  +  ++ +      
Sbjct: 371 NQMGEALSTMVSHIRKAAEEVNSRA------QALSGLSGGAYEGMEQQSGEITS------ 418

Query: 371 GEIAAVVDKNSQLTASATSMMNEVERIAEEGKQQLAEVTAVMGDIRTGAENVAETVS 427
             +A  V++ S  + +    M   ER+A+E  QQ       M +  +  E++A  ++
Sbjct: 419 --MAGAVEEFSATSLNIADNMGSTERLAQENAQQTRIGRNSMQEASSSLEHIAAALN 473