Pairwise Alignments

Query, 432 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

Subject, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  116 bits (291), Expect = 1e-30
 Identities = 73/197 (37%), Positives = 109/197 (55%), Gaps = 14/197 (7%)

Query: 248 ASDITQRIIKSHAIRDAANIAHATSQSTV----------EQANR----GVQLLDATVNTS 293
           +S + ++ +++  +  A N   AT+Q             ++ANR    G  +   T    
Sbjct: 268 SSGLERQRVETEQVATAVNQMAATTQEVASHVQRTADATQEANRLTGRGRDIAGETREAI 327

Query: 294 NAIAAQTHKTTESMLKLNEQSQSIQAIVATISAIADQTNLLALNAAIEAARAGEQGRGFA 353
             ++    +T  ++ +L + S  I  +V  I  IADQTNLLALNAAIEAARAGE GRGFA
Sbjct: 328 QRLSVAVGETGVTVTQLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFA 387

Query: 354 VVADEVRQLAARTSKSTGEIAAVVDKNSQLTASATSMMNEVERIAEEGKQQLAEVTAVMG 413
           VVADEVRQLA RT++STG+I A++ K  Q  A+A   M+   R AEEG  ++ E    + 
Sbjct: 388 VVADEVRQLAQRTAESTGQIHALIAKLQQTAAAAVQTMDAGHRQAEEGVARVMEADQALV 447

Query: 414 DIRTGAENVAETVSQLS 430
            I     ++ +  +Q++
Sbjct: 448 GISEAVAHITDMTTQIA 464



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 73/339 (21%), Positives = 127/339 (37%), Gaps = 84/339 (24%)

Query: 160 EGNILNANANFLRTMGYSKEQLQGKHHRLFCFDNFYQDNP-----HFWDDLRRGQYKKGL 214
           +G I   N  F+   G+S+++L    H L      + D P     H W  L++G    G+
Sbjct: 27  KGVITYCNDAFVEISGFSRDELVRAPHNLVR----HPDVPPAVFAHMWSTLKQGLPWMGI 82

Query: 215 FQRKNAYGDSIWLEAVYNPVMDDHGKV----VKVIKFASDITQRIIKSHAIRD------- 263
            + +   GD  W+ A   PV + +  V    V++   A  I +     H I         
Sbjct: 83  VKNRCKTGDHYWVNAYVTPVFEGNQVVGYESVRIKPTAEQIRRAEALYHRINQGKSAIPQ 142

Query: 264 ------------------------------------AANIAHATSQSTVEQANRGVQ--L 285
                                               AA ++       +    RG++  L
Sbjct: 143 RDKWLPVLQDWLPFILVSQLSFMIGASLNSHWGFALAAGLSVPLGLLGLSWQQRGLKRLL 202

Query: 286 LDATVNTSNAIAAQTH---KTTESMLKLNEQSQS---------IQAIVATISAIADQTNL 333
             A   TS+ + AQ +   +  ++ L+++  SQ          +Q     ++  A Q+N 
Sbjct: 203 RLAEQTTSDPLIAQMYTDSRGAQARLEMSILSQEARLKTCLTRLQDTAEHLNDQAAQSNT 262

Query: 334 LALNAAIEAARAGEQGRGFAVVADEVRQLAARTSKSTGEIAAVVDKNSQLTASATSMMNE 393
           LA N++    R   Q      VA  V Q+AA    +T E+A+ V + +  T  A  +   
Sbjct: 263 LAHNSSSGLER---QRVETEQVATAVNQMAA----TTQEVASHVQRTADATQEANRLTGR 315

Query: 394 VERIAEEGKQQLAEVTAVMGDIRTGAENVAETVSQLSID 432
              IA E ++ +  ++  +G+  TG      TV+QL+ D
Sbjct: 316 GRDIAGETREAIQRLSVAVGE--TGV-----TVTQLAKD 347



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 40  GIILDANPLFLKAVGYSLDEIVGKHHKLFCAEYYVNTSEYQQFWRELKQGQAKEGKFPRV 99
           G+I   N  F++  G+S DE+V   H L      V  + +   W  LKQG    G     
Sbjct: 28  GVITYCNDAFVEISGFSRDELVRAPHNL-VRHPDVPPAVFAHMWSTLKQGLPWMGIVKNR 86

Query: 100 HKNGQEIWLRATYFPI 115
            K G   W+ A   P+
Sbjct: 87  CKTGDHYWVNAYVTPV 102



 Score = 35.8 bits (81), Expect = 3e-06
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 261 IRDAANIAHATSQSTVEQANRGVQLL----DATVNTSNAIAAQTHKTTESMLKLNEQS-- 314
           ++  A  A  T  +   QA  GV  +     A V  S A+A  T  TT+      EQS  
Sbjct: 414 LQQTAAAAVQTMDAGHRQAEEGVARVMEADQALVGISEAVAHITDMTTQIAAATEEQSSV 473

Query: 315 -QSIQAIVATISAIADQTNLLALNAA 339
            + I   ++TI+ +ADQT+  A+N+A
Sbjct: 474 AEEISRNISTIALLADQTSEQAMNSA 499