Pairwise Alignments

Query, 432 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

Subject, 521 a.a., putative aerotaxis receptor from Pseudomonas putida KT2440

 Score =  118 bits (296), Expect = 4e-31
 Identities = 70/173 (40%), Positives = 103/173 (59%), Gaps = 5/173 (2%)

Query: 262 RDAANIAHATSQSTVEQANR----GVQLLDATVNTSNAIAAQTHKTTESMLKLNEQSQSI 317
           ++ AN    T+ +T ++ANR    G Q+   T      ++A   +T +++ +L + S  I
Sbjct: 293 QEVANHVQRTADAT-QEANRLTSQGRQIAGETREAIERLSAAVGETGQTVTQLAKDSDEI 351

Query: 318 QAIVATISAIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAARTSKSTGEIAAVV 377
             +V  I  IADQTNLLALNAAIEAARAGE GRGFAVVADEVRQLA RT++STG+I  ++
Sbjct: 352 GGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHGLI 411

Query: 378 DKNSQLTASATSMMNEVERIAEEGKQQLAEVTAVMGDIRTGAENVAETVSQLS 430
            K  Q  ++A   M    R A+EG  ++ +    +  I     N+ +  +Q++
Sbjct: 412 AKLQQTASNAVLTMETGHRQAQEGVDRVMQADEALVGISEAVANITDMATQIA 464



 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 77/368 (20%), Positives = 141/368 (38%), Gaps = 81/368 (22%)

Query: 125 MKTAAVITEDKYQLDAQAALFSALQKSQAIIEFSPEGNILNANANFLRTMGYSKEQLQGK 184
           M+    IT+ +    AQ  L S           + +G I   N  F+   G+++E+L G 
Sbjct: 1   MRNNQPITQRERTFPAQQRLISTT---------NAKGVITYCNDAFIEISGFTREELTGA 51

Query: 185 HHRLFCFDNFYQDNP-----HFWDDLRRGQYKKGLFQRKNAYGDSIWLEAVYNPVMDDHG 239
            H L      + D P     H W  L++GQ   G+ + +   GD  W+ A   P+ D++ 
Sbjct: 52  PHNLVR----HPDVPPAVFAHMWQTLKQGQPWMGIVKNRCKSGDHYWVNAYVTPIFDNNQ 107

Query: 240 KV----------VKVIKFASDITQRIIK-------------------------------- 257
            V           + I+ A  + QRI +                                
Sbjct: 108 VVGFESVRVKPTAEQIRRAEALYQRINQGKPPVPRRDKWLPVLQDWLPFILISQVGFLIG 167

Query: 258 -----SHAIRDAANIAHATSQSTVEQANRGVQ--LLDATVNTSNAIAAQ---THKTTESM 307
                S     AA ++       +    RG++  L  A   TS+ + AQ     +  ++ 
Sbjct: 168 NWLGHSWGFALAAGLSVPLGLLGLSWQQRGLKRLLRLAEQTTSDPLIAQMFTDSRGVQAR 227

Query: 308 LKLNEQSQSIQAIVATISAIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAARTS 367
           L++   SQ  + +   ++ + D    L+  A    A A +   G      E  Q+AA  +
Sbjct: 228 LEMAMLSQDAR-MKTCLTRLQDSAEHLSDQARQSDALAHKSSTGLERQRVETEQVAAAVN 286

Query: 368 K---STGEIAAVVDKNSQLTASATSMMNEVERIAEEGKQQLAEVTAVMGDIRTGAENVAE 424
           +   +T E+A  V + +  T  A  + ++  +IA E ++ +  ++A +G+         +
Sbjct: 287 QMAATTQEVANHVQRTADATQEANRLTSQGRQIAGETREAIERLSAAVGE-------TGQ 339

Query: 425 TVSQLSID 432
           TV+QL+ D
Sbjct: 340 TVTQLAKD 347



 Score = 39.7 bits (91), Expect = 2e-07
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 40  GIILDANPLFLKAVGYSLDEIVGKHHKLFCAEYYVNTSEYQQFWRELKQGQAKEGKFPRV 99
           G+I   N  F++  G++ +E+ G  H L      V  + +   W+ LKQGQ   G     
Sbjct: 28  GVITYCNDAFIEISGFTREELTGAPHNLV-RHPDVPPAVFAHMWQTLKQGQPWMGIVKNR 86

Query: 100 HKNGQEIWLRATYFPI 115
            K+G   W+ A   PI
Sbjct: 87  CKSGDHYWVNAYVTPI 102



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 261 IRDAANIAHATSQSTVEQANRGV----QLLDATVNTSNAIAAQTHKTTESMLKLNEQ--- 313
           ++  A+ A  T ++   QA  GV    Q  +A V  S A+A  T   T+      EQ   
Sbjct: 414 LQQTASNAVLTMETGHRQAQEGVDRVMQADEALVGISEAVANITDMATQIAAATEEQTAV 473

Query: 314 SQSIQAIVATISAIADQTNLLALNAAI 340
           +  I   ++TI+ +ADQT   A ++A+
Sbjct: 474 ADEISRNISTIAELADQTAEQAQHSAL 500