Pairwise Alignments

Query, 478 a.a., O-antigen polymerase (RefSeq) from Shewanella sp. ANA-3

Subject, 466 a.a., pilus assembly protein from Pseudomonas simiae WCS417

 Score =  117 bits (293), Expect = 8e-31
 Identities = 137/484 (28%), Positives = 213/484 (44%), Gaps = 60/484 (12%)

Query: 23  FLGSVLSGYITGYLGVDNAYDLKRILVIIFIVCSAVGLLWRPSIPIIVTSPFTLWVVASL 82
           FL +V+     G     + +DL+R++ I    C+ +  L    +  +V  P  L + A +
Sbjct: 12  FLVAVMCLLFVGICAPFSGHDLQRVMQIGIGACAVLYGLSVARVERLVDRPTALGL-ALI 70

Query: 83  FILGLISTIFSQHPFWSFVELANFLLLLCLFYVIGVLIADIGRTAALQYFFGFALFFSIC 142
             LGL+S++ +  P W+F E+A F+        I V  A + R           LF  + 
Sbjct: 71  IGLGLMSSMRAHQPLWAFAEVAVFVGC----GAIAVAFALLRRQGGEPLDRALILFVVLL 126

Query: 143 IAVKFFLLLLFHALD----NNRPDVHSLVADFMNVRFFNQLQVALLPLLCLSFYIEPLKK 198
             +K        AL         D  +L++ F N RF+ Q Q   LPLL L   I  L +
Sbjct: 127 CLIKSIQYTYAGALAFISAERVLDPDALLSGFSNKRFYGQFQTFTLPLLALPLLIPTLSR 186

Query: 199 YKRVAMVT-FSVLWLILLQSEARGALLALLVAAIVVYRFLPASFGKAFIRPIMKAVAFGT 257
             + A  T   V WLI +    RG  L + VAA+V+    P  +G+ ++   + A+  G 
Sbjct: 187 PLKAATFTLLCVWWLIAVGGGTRGTWLGMGVAAVVLAVLGP--WGRRWLGWQLAALLGGL 244

Query: 258 LL-WLVLIII---IPLFIFDSPIWQLRTNSSGRIDMWIYILHAIPEHIGLGYGPMSFAWA 313
           LL WLV  ++   + + I ++   +L T+ SGR  +W    H + E   LG+GPM FA  
Sbjct: 245 LLYWLVFKVLADHLGIEIANAASDRLTTSLSGRGPIWWQAWHMLVERPWLGFGPMHFA-- 302

Query: 314 EARPLPN---AHPHNALMQFLYEFGVVAFILLASWSLITLWSILKRLKLLGAKSSEHLAK 370
               +PN   AHPH A++Q+  E+GV + + +A  +    W+    L+   A S+E    
Sbjct: 303 ---DIPNSIAAHPHQAILQWTSEWGVPSALCVAVLAWRGGWATFGVLR-KRALSAE---- 354

Query: 371 NSQCSLDTSSHIVIETDTTDIVLAFALCAIWIYAMFDGVIVMPLSQ---ALLVA-LLALN 426
                           D   + L  AL    + +M DGVIVMP SQ   AL+V  L+AL+
Sbjct: 355 --------------RADLLRLCLFAALVGALVQSMVDGVIVMPNSQVWLALVVGWLMALH 400

Query: 427 CRHYQSRVITLPLKVALVAI-LITCGALLIVSLGDT------------ALNQQLYPRLWL 473
                + V       A  A+ ++  G L+ ++L D             A    L PR W 
Sbjct: 401 VWRAPAAVERSWAWGAWKALSVLAVGLLIFIALRDVPHFKQAQQQYLDAHGDYLQPRFWA 460

Query: 474 TGII 477
            G+I
Sbjct: 461 QGVI 464