Pairwise Alignments

Query, 414 a.a., diaminopimelate decarboxylase (RefSeq) from Shewanella sp. ANA-3

Subject, 422 a.a., diaminopimelate decarboxylase from Agrobacterium fabrum C58

 Score =  418 bits (1075), Expect = e-121
 Identities = 220/411 (53%), Positives = 275/411 (66%), Gaps = 5/411 (1%)

Query: 1   MDHFLYQDNTLYAEGCRVNDLAQQYGTPLYIYSRATLERHWHAFNNAVADHPHLVCYAVK 60
           M+HF Y D  L+AE   V ++A+  GTP Y+YS ATLERH+  F+ A AD   +VCYA+K
Sbjct: 1   MNHFGYIDGVLHAENVPVPEIAKAVGTPFYVYSTATLERHYKVFSGAFADVDAMVCYAMK 60

Query: 61  ANSNLAVLNVLARLGSGFDIVSGGELARVIEAGGDPAKVVFSGVGKTVAEMEQALNLGIY 120
           ANSN AVL  LA+LG+G D+VSGGEL R + AG   ++++FSGVGKTVAEM+ AL  GIY
Sbjct: 61  ANSNQAVLKTLAKLGAGIDVVSGGELRRALAAGVPASRIMFSGVGKTVAEMDYALEAGIY 120

Query: 121 CFNVESSAELEQLNDVAGRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEV 180
           CFN+ES  ELE LN  A + GK A VS R+NPDVDA TH  ISTG KENKFGI+ + A  
Sbjct: 121 CFNIESEPELEVLNLRAVKAGKRAHVSFRINPDVDARTHAKISTGKKENKFGISYERARA 180

Query: 181 VFARAHALPHLQVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLADQGIVIEHFDVGGGL 240
           V+A A  LP ++V G+D HIGSQ+TE+QPF DA   +  L++ L   G  I H D+GGGL
Sbjct: 181 VYAHAATLPGIEVTGIDMHIGSQITELQPFEDAFRLLRELVEVLRTDGHAISHVDIGGGL 240

Query: 241 GVTY--DDETPPHPDVYAAALLARLGDRKLKLIFEPGRAIAANAGIFVTQVLYLKENSDK 298
           G+ Y  D+  PP PD YA  +   L     K++ EPGR I  NAGI VT+V+Y+K+  DK
Sbjct: 241 GIPYRDDNNPPPLPDAYAHIVKNELKSLNCKIVTEPGRLIVGNAGILVTEVIYVKDGGDK 300

Query: 299 RFAIVDGAMNDLIRPALYSAWQNIIPVNPRDEQAQVF--DIVGPVCETGDFLGKDRALAI 356
            F IVDGAMNDLIRP LY A+  I PV    E A     DIVGPVCETGD+L  DR +A 
Sbjct: 301 TFVIVDGAMNDLIRPTLYEAYHGIRPVVQPSENAPRIKADIVGPVCETGDYLALDREMAA 360

Query: 357 -AAGDLLVVRSSGAYGFAMASNYNTRPRAAEVMVDGDKAYLVREREKLAQL 406
              GDL+ V S+GAYG   A  YN+R    EV+V GD+ +++R R    +L
Sbjct: 361 PQPGDLIAVSSAGAYGAVQAGTYNSRLLVPEVLVKGDRFHVIRPRGTYEEL 411