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SEED Subsystem: Staphylococcal pathogenicity islands SaPI in
Pseudomonas fluorescens FW300-N2E2
Experiments:
Add
Role
Gene
Name
CI-like repressor, superantigen-encoding pathogenicity islands SaPI
No genes
Cro-like repressor, superantigen-encoding pathogenicity islands SaPI
No genes
Degenerate integrase, superantigen-encoding pathogenicity islands SaPI
No genes
Ferrichrome-binding periplasmic protein precursor in superantigen-encoding pathogenicity islands SaPI
No genes
GMP synthase [glutamine-hydrolyzing] (
EC 6.3.5.2
)
Pf6N2E2
_3164
Heat shock protein 60 family chaperone GroEL
Pf6N2E2
_5607
Hypothetical MW0753 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical MW0754 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAR0365 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAR0369 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAR0371 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAR0372 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAR0385 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0786 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0787 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0788 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0789 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0790 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0791 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0792 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0793 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0794 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0795 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0796 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0797 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0798 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0799 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0801 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV0808 homolog, near pathogenicity islands SaPI att-site
No genes
Hypothetical SAV2026 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Hypothetical SAV2027 homolog in superantigen-encoding pathogenicity islands SaPI
No genes
Integrase, superantigen-encoding pathogenicity islands SaPI
No genes
Methionine ABC transporter substrate-binding protein
Pf6N2E2
_3926
Pf6N2E2
_3953
Pf6N2E2
_4174
Putative DNA helicase, superantigen-encoding pathogenicity islands SaPI
No genes
Putative primase, superantigen-encoding pathogenicity islands SaPI
No genes
Putative terminase, superantigen-encoding pathogenicity islands SaPI
No genes
SSU ribosomal protein S18p
No genes
Secreted protein Ear, superantigen-encoding pathogenicity islands SaPI
No genes
Superantigen enterotoxin SEB
No genes
Superantigen enterotoxin SEK
No genes
Superantigen enterotoxin SEL
No genes
Toxic shock syndrome toxin 1 (TSST-1)
No genes
tmRNA-binding protein SmpB
Pf6N2E2
_3378
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cellulophaga baltica 18
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia amylovora T8
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC100
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Methylophilus sp. DMC18
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas aeruginosa PA14
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. BP01
Pseudomonas sp. DMC3
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas sp. SVBP6
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodanobacter sp000427505 FW510-R12
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Synechocystis sp000284455 PCC 6803
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthobacter sp. DMC5
Xanthomonas campestris pv. campestris strain 8004
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