SEED Subsystem: Polyamine Metabolism in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name  
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19) Pf6N2E2_3126
  Pf6N2E2_3131
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) No genes
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Pf6N2E2_1338
  Pf6N2E2_1744
  Pf6N2E2_3127
  Pf6N2E2_4816
  Pf6N2E2_5477
Agmatinase (EC 3.5.3.11) Pf6N2E2_2655
Agmatine deiminase (EC 3.5.3.12) Pf6N2E2_3876
Agmatine/putrescine antiporter, associated with agmatine catabolism No genes
Arginine decarboxylase (EC 4.1.1.19) Pf6N2E2_3334
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine antiporter No genes
Arginine/ornithine antiporter ArcD Pf6N2E2_1517
  Pf6N2E2_2906
  Pf6N2E2_2907
Biosynthetic arginine decarboxylase (EC 4.1.1.19) Pf6N2E2_3504
Carbamate kinase (EC 2.7.2.2) Pf6N2E2_2910
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) Pf6N2E2_1606
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) Pf6N2E2_1605
DNA-binding response regulator, LuxR family, near polyamine transporter Pf6N2E2_1774
  Pf6N2E2_4814
N-carbamoylputrescine amidase (3.5.1.53) No genes
Ornithine decarboxylase (EC 4.1.1.17) Pf6N2E2_3334
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion No genes
Predicted polyamine sensor NspS, involved in biofilm formation No genes
Probable spermidine/putrescine substrate binding protein in Mollicutes No genes
Probable two-component sensor, near polyamine transporter Pf6N2E2_4813
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter No genes
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) Pf6N2E2_1425
  Pf6N2E2_1770
  Pf6N2E2_4290
  Pf6N2E2_4513
  Pf6N2E2_4514
Putrescine carbamoyltransferase (EC 2.1.3.6) No genes
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Pf6N2E2_1743
  Pf6N2E2_3128
  Pf6N2E2_4815
  Pf6N2E2_5480
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) Pf6N2E2_4515
Putrescine transport system permease protein PotH (TC 3.A.1.11.2) Pf6N2E2_4516
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) Pf6N2E2_4517
Putrescine-ornithine antiporter No genes
Putrescine/proton symporter, putrescine/ornithine antiporter PotE No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B No genes
Spermidine N1-acetyltransferase (EC 2.3.1.57) No genes
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Pf6N2E2_1745
  Pf6N2E2_3129
  Pf6N2E2_4817
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Pf6N2E2_1746
  Pf6N2E2_3130
  Pf6N2E2_4818
Spermidine synthase (EC 2.5.1.16) Pf6N2E2_2452
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes
Transcriptional regulator, MerR family, near polyamine transporter No genes
Transcriptional regulator, TetR family, associated with agmatine catabolism No genes
Transcriptional regulator, luxR family, associated with agmatine catabolism No genes

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